RNA id: TU217938


Basic Information

Item Value
RNA id TU217938
length 313
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G160815
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26414873 ~ 26415185 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actgagaaaccctgagtgttgtGGAAACCTATGGCagtattagctagcagttcgtcccacgtagcttgttttaacatggtaaacatgcagactataatccgatatactcgcctccgAATGGCGAAAgggcttagcggctaatgctaaaatgAAAGGACCAtaaagtgcgaaaaatatgatagtatttgttttaattattacattttcttgTTGGAACCTGGATAAATGTGAGCAGCCCCAAGAAACACATCCACCATAGACAAACTTGGGTCGATGTAACTGACTTGCTGCCGGCTAGTGTGGTTgctgatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217927 lncRNA upstream 44433 26370222 ~ 26370440 (+) True G160806
TU217926 lncRNA upstream 44996 26369649 ~ 26369877 (+) True G160805
TU217925 lncRNA upstream 50513 26364104 ~ 26364360 (+) True G160804
TU217921 lncRNA upstream 65279 26347637 ~ 26349594 (+) True G160803
TU217922 lncRNA upstream 65578 26347794 ~ 26349295 (+) False G160803
TU217928 lncRNA downstream 19454 26434639 ~ 26440371 (+) True G160807
TU217985 lncRNA downstream 153743 26568928 ~ 26575274 (+) True G160851
TU218005 lncRNA downstream 354379 26769564 ~ 26814069 (+) True G160869
TU218058 lncRNA downstream 450940 26866125 ~ 26866407 (+) True G160913
TU218066 lncRNA downstream 502083 26917268 ~ 26917645 (+) True G160921
XM_022679784.1 mRNA upstream 72271 26323820 ~ 26342602 (+) False LOC103037315
XM_022679783.1 mRNA upstream 72271 26323832 ~ 26342602 (+) True LOC103037315
XM_007254483.3 mRNA upstream 72271 26323833 ~ 26342602 (+) False LOC103037315
XM_007254480.3 mRNA upstream 96485 26193982 ~ 26318388 (+) True sema4b
XM_007254485.3 mRNA upstream 351559 26046342 ~ 26063314 (+) True idh2
XM_022679785.1 mRNA downstream 202077 26617262 ~ 26750698 (+) True LOC103021732
XM_022679786.1 mRNA downstream 341397 26756582 ~ 26789753 (+) True LOC103030887
XM_022679788.1 mRNA downstream 438695 26853880 ~ 27052199 (+) True veph1
XM_022679789.1 mRNA downstream 449374 26864559 ~ 27052199 (+) False veph1
XM_022679791.1 mRNA downstream 673690 27088875 ~ 27103594 (+) False LOC103022175
TU217233 other upstream 2295048 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 3560792 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 3791566 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 4262088 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 5403079 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 334194 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 490059 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 694486 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 2206943 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 2330511 28745696 ~ 28759007 (+) False fam219b

Expression Profile