RNA id: TU217966


Basic Information

Item Value
RNA id TU217966
length 4627
RNA type TUCP
GC content 0.41
exon number 2
gene id LOC103021732
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26617262 ~ 26755313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAACCATTCCACCCTGTTTTCTGTGTCTGGTGTTCAGAGCCAGACTGCCTTTCCCTTATCTTCTCAATCTGCCAGCTCCCGCGTTTACAGCTCAGTCTGGCTCCACTCAGCCAGCTGTACATGTCGATAAGAAGTCCTATTCGCAACCAATTATATAGAAGCGGTTCATTTATACATAATTGTGAACAGGTTGTATGCACCAACAGCTGATTACTGTAGTACTAATAGCGCTCCCTCGTGGAGGAGCCTGCTAAAGGTGAGCGAGCGAGTGAAATATGAAACAATACAAATACTACAGTCCaattttcccaatttatttctcctttttctgctcagattattatattttcagttattttggGCTAAGCAGATCACATGACCTAAGCACTGATAGAGCTGAAACATAATAGAGAAGTCGTAGATTTAGTTTAATCACATAACAGCGTCACATAACATCAAATGTATGCTGACCAGCCATTTCTTTAAcaccaccttcttgtttctacacctttTATCATATATTTCCAGCTCCACTGGGTGGTCCAAATATAGGAGCAAATTTCTGAATACTTGATTATCCTTCTTTTACCCTGTACTATAGTATTCAGGAcctcacaggaccaccacagagcagctattatttaagtggtgggacattCATTCTCAGTGGTTCagacgcagcagtgctgctggagtttttaaacacctcagtgtcattGCTGGAATGAGAATAATCCATTAACCAGAAAAACCCAgccaacagtgtcctgtgggcagcgtcctgtgggcacgGGTCAAAAGAATGAGCAAACAAACTTTGAAGTAACTGATACAGAGCTTCTAGACGTGCCTGACTTTACATTTACGAGGTAGACAGTGACAGAAGGCCCTgtcgtacaccctgtgcaaggcgtgtcacgatgcttattgctatcttacacccaatCAACAGTCTGTTTTTACACCTAGTTTAAGTAGTGCGGCACTCGTGAATATATCTGCACCGATATGCAGCGTGTTTTTCTGGCATATTCATATCTTGACTGATTTGAACAACAGTCGACAGTGAGGCGTTCATTGCTAATTTGGCAACCCAGGTGTGCCACACGTGCCCAGAGTGCACATACCCaccttttacatcaacaataaacagaatacaaaataaaataaaattgctgttcctgtaaatgccCTGATCGCACACCTTTACAGGGTAAACGTACAGGTCAGTTTCCTATGCTGAgaagtgctgcgctgttaaaatagcaatctgccgaAGTCAGAggacacctggctcttaaagagaatggcaatcgacacgctgattggtttatttcacgttgcaaataaaccaaaacacacccataattaattacgggaattagttcatgccttttgcctgtttggagctgtgcaaggtgtacttttcctgtcgttacgatagcgaagacacactgatgcaccctaaatcaagctgttgattgttaaaatagggcccacagTCTATAAAAATCTCCAGCAGCATATAATACTGTacctgatctgtggtggtgatATTTCTTGTGGAGTACTCTGACCAACCATCAGATTAagacagtgagtgtagaaaccAGAAGGTGGTGTAAAGTTGTGCCTAAACTGGGCAGATTTGAAATATTGGTCCATCTGGTTGAGTTATCTGCCAGTGCATACAGTATACCATTCCAAtagtaattcatagtgaatgcctaaaatgaataaagatatatttatGCTAGCTGTAAACTCCTAAAATCTGATTGGATTAATAGGAAATTTTGGGGGGAATTTCCTGCAAATTATGGTTTTGTTTCGGCAGCCCCTGTTGAGATGTGGAGGTATGAAACGAGACGTTTTGCACACGTGAAGACGACGGCGATAATGATGGTAAAAGCAAAGGGCAGTTAACTTGTAAAGCCTGAACCAAATATAGTGTTTCTAAACGTTCCACTGATGTTCATGTGCGGATGCAAAAGACCACTGGAGTGGTCAGTGTAGGAATTGCATGTGCGAAATGGAAACaaaggagacaaaaaaaaagcactttacgTACCGAAGGAGAGACTCCGAGCCTGAGATTACGGCTCAAcggcgctgtgtgtgtgtgttagaagtGTGAGTTGCAgaggaaagttttttttgtgtatttaatgtCACAAGCTGGAAACATGAAAGAAGAATGTAACAACTGAAATGACATTGTATCTGATTTTACAGTGGTATCGATCACTCCAGCACTTGGTTGCAGTTGGTTGCAGAAGGTGTGAATCAGAGTTACTTAGcttgattattttttgtttgtttttttgtagtttttttattgtaattttttttggtgtgaATCTCTCATGTAGTTTGATCTCTACTGAATCGACTGAAACCTGGGGCCTCATTTATATAAGAATGTGCATGAATTAAATTCTAAATATGGATAGGTGCTGCATAGAGTTGACTACTATTGGCcgactattactattattagtcaattagtcaatTCTGTGGGCATGTTAACACCTGTAGTTGTTTTGTCTGATCCATATTGGTTCACCTTAGTTGGGGGAAAACAACTCTGGGTCTTTGGTTATCAAATAGACCTGTCCAGGTGGCAAAGctaaaaaagcaaatacaaaaagaatgtcctgtgttctggactagtgCATATttctgtatagttttttttaaaaccttttcattaggactcctcctatcactagtgatgctccaacaccaggtgGGTGaagctagcacatgcctcctccgatacatgtgaagtcagccaccgactgtttttgaactgctgctgatgcagcattaccgagtagcatcacagcacgtttgcaggaaagcgcagtgactaggttacgatacatcagctcacagacgccagtgtgctgatcagcatcaccctttggagtgatgtgggaagagagcaccatctactgttggtctgcaggtctaggttcagcaacagtatgtgctgaaagaatgaggtcagctgactacctgaatatactgaatatagaccaggttattccaacAATGATAAATTTTAGTTCTTCCCTGATAACATGGGCATATTCTAAGATGACAATGCCAAGATTCACCAGGCTGAATTTTTTGATAAATACTTTActggtattgttttttttttttcagaagtttgaggtgttcctcttccacttttattttgtactgtatttggcgtgtattttttttttttttttttttttcagaagtttgaggtgttcctcttccacttttattttgtactgtatttggcgtgtattttttttttttttttttttttttttttttcaagctgttgaatggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactttcttctctctctctctctctctctctctctctctctctctctctctaaaagcAGCCCAAAAAATGCACCCCTGCCACCTCTAGAATTTTCACTCGCCactggattttcaaacaagcccaaaTAGATGGGAAAACCgtgaacctggcaactctggagTAGGAACCTATCTGAAGCTCCTCCCCTTTCCAATATAGCATCCTGTCATCTCCACCCTTATCTCTCCTTCCTGACTCTACTTAGTGTAGAGGAGGGACTCGCTTTCTATGTCAAGCTGAAGCTTGGCACAAATCCAGCCCAAAGTTCTCTGAGGTTTCTCCTCTCGTCTTTCTCTTCTCGAACAGCTGTCCTGGTGGCCCCTGTCCACTGAAGAACAAGTTAAAAGGAGGATAAAAAGAACAGTCtgcaattatagaactacaaattgTTCTAATATGATGAGATGAATTGATTAGGTGGACAATGAGTGAGGAAACAAAAAGGTGGATATACAATAATCttatgcttgattggtgtacaaacaaacaaacacgcaAAAAAGTTACTGTTCAGTCACAGTCACCATCAGCTTTGCCAGTCAAAGCCTGGACCACCGTCGTCCAACACCTGCTGTACTGCACTGGCAGTAGGCAGCGTCTCGGAAGACACTGTCGTAGATCAGTACGTTAGTGATGTAGGAACATAGTGTCCATGCCAACGCAAACACTTGACATCACCGATTCGCCAGCGTTGCAGCTGCAGAGGCGTGATTGACAGTTTGGCAGGTTGGCATGGCAGCCACATCCTCACACAGGCAGCGAGCGGCGGATCCGTGTTAACACCCGTACAATGCCACACCGCTCTCTTCTCCTTCACCACGCACTGGCTGATTTCACAAAGCGTCACAGCCGCAGTTTGTTAGCATCCGCCGGTCTAACCTGTGTAGCAAAAGGATCTTTTAATGTACATTTcggtttcttttattttccgtttttaatttatttttttagagccGTTTAGATCTCTATAGAACAGAAGGATAGATTTCTACATAATATATGAGTACACATgcactgtatgtatatgtagtGTATATCTGCAGTGTACACTGACCTGGGGGGCGTGGCTGCGCTGTGCGCAGGTTTTTCGCTCGGCCCGCAACTTTGCCTGATAGAGAATGAGTGGCTTTCTGATCTATGTGAATTAGAAaggttgaataaaaaaataaaacactggagAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217985 lncRNA upstream 174105 26568928 ~ 26575274 (+) True G160851
TU217928 lncRNA upstream 309008 26434639 ~ 26440371 (+) True G160807
TU217938 lncRNA upstream 334194 26414873 ~ 26415185 (+) True G160815
TU217927 lncRNA upstream 378939 26370222 ~ 26370440 (+) True G160806
TU217926 lncRNA upstream 379502 26369649 ~ 26369877 (+) True G160805
TU218005 lncRNA downstream 14251 26769564 ~ 26814069 (+) True G160869
TU218058 lncRNA downstream 110812 26866125 ~ 26866407 (+) True G160913
TU218066 lncRNA downstream 161955 26917268 ~ 26917645 (+) True G160921
TU218156 lncRNA downstream 416330 27171643 ~ 27171938 (+) True G160993
TU218157 lncRNA downstream 417731 27173044 ~ 27173343 (+) True G160994
XM_022679784.1 mRNA upstream 406777 26323820 ~ 26342602 (+) False LOC103037315
XM_022679783.1 mRNA upstream 406777 26323832 ~ 26342602 (+) True LOC103037315
XM_007254483.3 mRNA upstream 406777 26323833 ~ 26342602 (+) False LOC103037315
XM_007254480.3 mRNA upstream 430991 26193982 ~ 26318388 (+) True sema4b
XM_007254485.3 mRNA upstream 686065 26046342 ~ 26063314 (+) True idh2
XM_022679786.1 mRNA downstream 1269 26756582 ~ 26789753 (+) True LOC103030887
XM_022679788.1 mRNA downstream 98567 26853880 ~ 27052199 (+) True veph1
XM_022679789.1 mRNA downstream 109246 26864559 ~ 27052199 (+) False veph1
XM_022679791.1 mRNA downstream 333562 27088875 ~ 27103594 (+) False LOC103022175
XM_007232094.3 mRNA downstream 333562 27088875 ~ 27103594 (+) False LOC103022175
TU217233 other upstream 2629554 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 3895298 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 4126072 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 4596594 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 5737585 21009302 ~ 21011794 (+) True G159748
TU218064 other downstream 149931 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 354358 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 1866815 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 1990383 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 2315507 29070820 ~ 29116795 (+) True G161331

Expression Profile