RNA id: TU218156


Basic Information

Item Value
RNA id TU218156
length 296
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G160993
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27171643 ~ 27171938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacaccttttttgaatagagccgaataacgttttaaaaaccgaattctgtggggatataaaaatttgacaatataagcagaggttacactagctgttacatttaaataaaggaggtagaattacagtatattagaaaaaaacgtgattgaaagttttctgttttgccattgaaacctatggggatgggtggagttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttaagagacgatgctctgtccagctatatacagtctatgggttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218066 lncRNA upstream 253998 26917268 ~ 26917645 (+) True G160921
TU218058 lncRNA upstream 305236 26866125 ~ 26866407 (+) True G160913
TU218005 lncRNA upstream 357574 26769564 ~ 26814069 (+) True G160869
TU217985 lncRNA upstream 596369 26568928 ~ 26575274 (+) True G160851
TU217928 lncRNA upstream 731272 26434639 ~ 26440371 (+) True G160807
TU218157 lncRNA downstream 1106 27173044 ~ 27173343 (+) True G160994
XR_002651270.1 lncRNA downstream 63919 27235857 ~ 27236813 (+) True LOC111194785
TU218183 lncRNA downstream 166189 27338127 ~ 27339174 (+) True G161017
TU218184 lncRNA downstream 166189 27338127 ~ 27339174 (+) False G161017
TU218182 lncRNA downstream 166364 27338302 ~ 27339174 (+) False G161017
XM_007232092.3 mRNA upstream 52379 27109672 ~ 27119264 (+) True ccnl1
XM_007232093.3 mRNA upstream 56041 27109671 ~ 27115602 (+) False ccnl1
XM_022679791.1 mRNA upstream 68049 27088875 ~ 27103594 (+) False LOC103022175
XM_007232094.3 mRNA upstream 68049 27088875 ~ 27103594 (+) False LOC103022175
XM_022679790.1 mRNA upstream 68049 27092864 ~ 27103594 (+) True LOC103022175
XM_022679793.1 mRNA downstream 30556 27202494 ~ 27203910 (+) True LOC111194784
XM_007232086.2 mRNA downstream 251572 27423510 ~ 27429781 (+) True ssr3
XM_015600826.2 mRNA downstream 590453 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA downstream 590469 27762407 ~ 27778466 (+) True slc33a1
XM_007231545.3 mRNA downstream 612958 27784896 ~ 27796504 (+) True c18h3orf33
XR_002651269.1 other upstream 54432 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 264016 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 416330 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3051818 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4317562 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 1450190 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 1573758 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1898882 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 3703100 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 3703180 30875118 ~ 30878312 (+) False hmgn2

Expression Profile