RNA id: TU218184


Basic Information

Item Value
RNA id TU218184
length 954
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G161017
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27338127 ~ 27339174 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgttacattaactaacataaataattttttatgaaCAAAAGGCACACTGTTCAaatataaacaagaaaacataTGTACAACTTCTCACAAATTAAGTATGGAGATGGCGGGGGGAGGGGCTTgagtctttaaaaaaagaaaaaaaaaaacaaaacaaaaaaaaaaacaaagaaacaacaaaaaagaatgtCAAAGCTTCAATGACGTCAAGCGCCAAGTCCATGTGATGGACCACCAGTGTCTCAAAGTTCAGAAGGGGGAGGGGCTTTCTCTGCAGAGTCACAAAATCACATATCCATACACGCCCAACAGCAGTCTGTTTAGAAGTGAAGATGGGTATGACCTGCATCCACATGGTCAGGGGCACGAGGAGACGGGCACTAAACGGTCTCTCAGACTCACAAACACATgttcccacacacactcactcacacacacacacacactcctaaaggccctgtcccactgcgattgcgtctaaatatccactaaagtacgtccaaatttatcagaaaacaATATTCCgtctaaattgaagttggacgccgacttccaaatttgtacgtcgacttccactctttggacgtcgacttccactttttggaagtcgacgtccactttttggacgtcgacttccaactatatatggttgttttttctagtgaatcatcatttcttcttgagctacaagagagagcacatctattctcttctacacaaccatggaccacagattccttgcagtgatggtgcagcagcagaacatactcctccatgtgctggaccagaccgggaggaggaggaggcggcagCAGGAGAGGACTGTTCCTCGGGGGCTCGAGCTGGTTCCTCGGGAGCTGGAACTGCCTCCTCGGAAAATCCTTCCTCTTGGCTGGCATCTTGGAAAGTGTGGAAAAGCGATGGacgccagaaaaatatttttatggacttcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651270.1 lncRNA upstream 101314 27235857 ~ 27236813 (+) True LOC111194785
TU218157 lncRNA upstream 164784 27173044 ~ 27173343 (+) True G160994
TU218156 lncRNA upstream 166189 27171643 ~ 27171938 (+) True G160993
TU218066 lncRNA upstream 420482 26917268 ~ 26917645 (+) True G160921
TU218058 lncRNA upstream 471720 26866125 ~ 26866407 (+) True G160913
TU218231 lncRNA downstream 61787 27400961 ~ 27401187 (+) True G161060
TU218250 lncRNA downstream 247355 27586529 ~ 27586770 (+) True G161079
TU218251 lncRNA downstream 263685 27602859 ~ 27627422 (+) True G161080
TU218293 lncRNA downstream 441680 27780854 ~ 27783189 (+) True G161115
TU218294 lncRNA downstream 445858 27785032 ~ 27795643 (+) False c18h3orf33
XM_022679793.1 mRNA upstream 134217 27202494 ~ 27203910 (+) True LOC111194784
XM_007232092.3 mRNA upstream 218863 27109672 ~ 27119264 (+) True ccnl1
XM_007232093.3 mRNA upstream 222525 27109671 ~ 27115602 (+) False ccnl1
XM_007232094.3 mRNA upstream 234533 27088875 ~ 27103594 (+) False LOC103022175
XM_007232086.2 mRNA downstream 84336 27423510 ~ 27429781 (+) True ssr3
XM_015600826.2 mRNA downstream 423217 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA downstream 423233 27762407 ~ 27778466 (+) True slc33a1
XM_007231545.3 mRNA downstream 445722 27784896 ~ 27796504 (+) True c18h3orf33
XM_022679983.1 mRNA downstream 465889 27805063 ~ 27965690 (+) True plch1
XR_002651269.1 other upstream 220916 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 430500 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 582814 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3218302 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4484046 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 1282954 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 1406522 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1731646 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 3535864 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 3535944 30875118 ~ 30878312 (+) False hmgn2

Expression Profile