RNA id: TU218236


Basic Information

Item Value
RNA id TU218236
length 221
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G161065
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27410488 ~ 27410708 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttctgcgctagaaatgcgcactctctctgcttttagactctttggcccgtttttctgcgttagaaatgcgcaccctctctgcttttagactctttggcccgtttttctgcgttagaaatgagcactctctctgcttttagactcttttgccccgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcccatttctgacacctag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218233 lncRNA downstream 2154 27408072 ~ 27408334 (-) True G161062
TU218228 lncRNA downstream 25910 27367862 ~ 27384578 (-) True G161057
TU218213 lncRNA downstream 215291 27191465 ~ 27195197 (-) True G161042
TU218209 lncRNA downstream 238550 27171404 ~ 27171938 (-) True G161038
TU218201 lncRNA downstream 256302 27153446 ~ 27154186 (-) True G161030
XR_002651271.1 lncRNA upstream 9778 27420486 ~ 27421684 (-) True LOC111194786
TU218258 lncRNA upstream 19233 27429941 ~ 27434073 (-) True kcnab1
TU218317 lncRNA upstream 281727 27692435 ~ 27703228 (-) True G161136
TU218328 lncRNA upstream 368016 27778724 ~ 27779787 (-) True G161147
XR_002651272.1 lncRNA upstream 770907 28181615 ~ 28191026 (-) True LOC111194796
XM_007232089.3 mRNA downstream 33751 27339409 ~ 27376737 (-) True tiparp
XM_022679792.1 mRNA downstream 113489 27136682 ~ 27296999 (-) True lekr1
XM_007232095.3 mRNA downstream 492820 26905211 ~ 26917668 (-) True ptx3
XM_007250982.3 mRNA downstream 604154 26801289 ~ 26806334 (-) True LOC103047806
XM_015600979.2 mRNA upstream 8904 27419612 ~ 27420256 (-) True LOC107196896
XM_007232085.3 mRNA upstream 22907 27433615 ~ 27578918 (-) False kcnab1
XM_022679794.1 mRNA upstream 283035 27693743 ~ 27704738 (-) True LOC103029583
XM_022679796.1 mRNA upstream 308346 27719054 ~ 27751937 (-) True gmps
XM_022679798.1 mRNA upstream 573655 27984363 ~ 27988762 (-) True LOC103046178
TU218137 other downstream 291235 27112698 ~ 27119253 (-) True G160979
TU217810 other downstream 1671126 25738881 ~ 25739362 (-) False G160715
TU217811 other downstream 1671126 25738881 ~ 25739362 (-) True G160715
TU217773 other downstream 1807809 25600686 ~ 25602679 (-) False LOC103041696
TU217577 other downstream 1933641 25476094 ~ 25476847 (-) True G160566
XR_002651283.1 other upstream 1240223 28650931 ~ 28652784 (-) False LOC111194804
TU219094 other upstream 2904898 30315606 ~ 30325858 (-) True G161711
TU219720 other upstream 5243466 32654174 ~ 32658387 (-) False tap1
TU219721 other upstream 5243466 32654174 ~ 32658387 (-) False tap1
TU219984 other upstream 6687220 34097928 ~ 34100949 (-) False LOC103042403

Expression Profile