RNA id: TU218250


Basic Information

Item Value
RNA id TU218250
length 242
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G161079
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27586529 ~ 27586770 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttataatactgtggtatgatttgcagtaactcctaaagaagaacacagtaactcctcagtcattagtaatgggttaccatgtgctgctgttaactcccgaaaaaagaagacagggaccccttattaattatctatgaagaacacagggatgcctagtccgttatctaacacaaatatttatttattaaaacatgatttcccccagaataaggatgtaGGACACAGCCTAGggtaaagctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218231 lncRNA upstream 185342 27400961 ~ 27401187 (+) True G161060
TU218183 lncRNA upstream 247355 27338127 ~ 27339174 (+) True G161017
TU218184 lncRNA upstream 247355 27338127 ~ 27339174 (+) False G161017
TU218182 lncRNA upstream 247355 27338302 ~ 27339174 (+) False G161017
XR_002651270.1 lncRNA upstream 349716 27235857 ~ 27236813 (+) True LOC111194785
TU218251 lncRNA downstream 16089 27602859 ~ 27627422 (+) True G161080
TU218293 lncRNA downstream 194084 27780854 ~ 27783189 (+) True G161115
TU218294 lncRNA downstream 198262 27785032 ~ 27795643 (+) False c18h3orf33
TU218309 lncRNA downstream 306317 27893087 ~ 27893477 (+) True G161129
TU218351 lncRNA downstream 443843 28030613 ~ 28035195 (+) True LOC111194734
XM_007232086.2 mRNA upstream 156748 27423510 ~ 27429781 (+) True ssr3
XM_022679793.1 mRNA upstream 382619 27202494 ~ 27203910 (+) True LOC111194784
XM_007232092.3 mRNA upstream 467265 27109672 ~ 27119264 (+) True ccnl1
XM_007232093.3 mRNA upstream 470927 27109671 ~ 27115602 (+) False ccnl1
XM_007232094.3 mRNA upstream 482935 27088875 ~ 27103594 (+) False LOC103022175
XM_015600826.2 mRNA downstream 175621 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA downstream 175637 27762407 ~ 27778466 (+) True slc33a1
XM_007231545.3 mRNA downstream 198126 27784896 ~ 27796504 (+) True c18h3orf33
XM_022679983.1 mRNA downstream 218293 27805063 ~ 27965690 (+) True plch1
XM_007231544.3 mRNA downstream 382288 27969058 ~ 27977682 (+) True LOC103040346
XR_002651269.1 other upstream 469318 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 678902 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 831216 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3466704 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4732448 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 1035358 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 1158926 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1484050 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 3288268 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 3288348 30875118 ~ 30878312 (+) False hmgn2

Expression Profile