RNA id: XM_007231545.3


Basic Information

Item Value
RNA id XM_007231545.3
length 1849
RNA type mRNA
GC content 0.45
exon number 5
gene id c18h3orf33
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 27784896 ~ 27796504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgtgttagactgtgtttaTCTCTGCAGTCTCTGGATTTTTAGGCTACAGCGGTTTGCGGTACTTTGGGCCCTCTCGCTTGCCGTCTTCAGCGGGGGCGGGGTCTGAGttgtagtttttacagtgtaaacaaCATGCCGGGCTCGTGTAGTGAAGAGGAGCAGCAGGAAGAGCAGAAACAGAGTTTTAATGTGGTCACAGTGGTGTCACAGTTTGCGGATGATAATCTGACTCTGGTGCGGAACATCAGCACAGGACTTGCAGTGGCCGGTGTGCTGGTCATAGCGAGGAGCATCAGACTGATTACAAAATTCAGCTCTCCCTCTGAAATCCCGACCCGGTTCATCGAGAGGAGCATCAGTATCAGGGGCAGAGTGAGGAGAGTAACTGAGAGCGGCCTGGAAGTGGAACACGTCCCAATTTATGTCCCTTTGGTTTCTCCCCTGCTGACTAAACGTCAGCCCGTGGCCTCCCTGGATGTGCGGCTGGCCGGGGTGGAGCTGACCCCGCAGGGCCAGGAATGGCTGTCCCAGCGGCTCAGGCCGACCCAGGCGGTGTGGCTCCGGTTGATCAGCCGCCAGGAGGAGAGCCTGCACTGCCTAGTGTCGGTCAGCAGGGGTTCCATCTTTACCACATGTATCAATGAGGAGCTTCTGTGGTTGGGTCTGGGGAGGACCGCCCCTCTCCAGGGTGTGGACCCTCACTCTCGACTCTACTTCAAGATCCACAGGCGGCTGCTGAAGTCTGAGCAGAGGGCAGAGAAAAAGGGGGAAGGCCTTTGGAAAGAGGAGAGTCTGAGGGAGAGGATCAGTCAGGCCCTCAGCAGCAACATAGTTGTTGCCACAATTAAGAGAATGCTAAACTGGATGTCTAGAACTAAGGACCGGTGATGCCCTgatataaaaatctctatggaCCACATGGCAAAGTGGAAATGTCAACTATTCAGAACCACTGACTGGacataatatgttttaatattcattgAGAGCAACATATGTTGCCTTTAAGATTATTTTCCCAGGGTTGTTCATTCACTTTTCAACAAGACACTAAATTAAAAAGATGTGGCTGTGGCTGGAAGAAGAGGCTACAATACTGGACTGACCTGTCTGCAGTCCCTACATGTCTTTaatagagaatgtgtggagaattttgaaACACAAATGTGACAAAGACAATGTCATACTATTATACTTATACACTACAAGACGGGTTCATACTGcctacaattaaataaaagacaaaggGAATTAAAGAAATACTGTAGTTATTTGCATTTCCATACTGTCCTAACTGTGCTGTCTGAAAGGATGATACACCATCCAGTACTTCCCGGATGAGTTGAAAAGTTAAAGATGAGAATGCATTTAAAACCTCAGTTATAGAAagtctttcctggacagtagagacagtcactccaacaaaagcaaggtaAACTCTGTTTAATATACTTGATTTCTGAAGCAACTGCTTTGCTTTGGCCCCAGTATGCTGTGCAGCTaccattgttttttgtttggtcTTATTAAGAGgtttatgttttgtgtgtgtgtgtgtgtatgtttatgtggtatatatgtttgtttatactgtataatgagATTTAGTTGTGGTAATTCCACTGGCAGAGTGTTActtttggtgttgggttggaggttggataagggtctccaccagTGAGCTGCTAATTTACAGGTAATTAGTGAATTGCTGCTTGTGTGGCTTTTGCACtcttttctgttatttgtttaaaaatgttgaggAGAGTTACATAGAGTTGAGAATATGACTCCATAGGTGTTAATTGAATCTTATAGtagactttcttttttttattcaacattTG

Function

GO:

id name namespace
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218293 lncRNA upstream 1707 27780854 ~ 27783189 (+) True G161115
TU218251 lncRNA upstream 157474 27602859 ~ 27627422 (+) True G161080
TU218250 lncRNA upstream 198126 27586529 ~ 27586770 (+) True G161079
TU218231 lncRNA upstream 383709 27400961 ~ 27401187 (+) True G161060
TU218184 lncRNA upstream 445722 27338127 ~ 27339174 (+) False G161017
TU218309 lncRNA downstream 96583 27893087 ~ 27893477 (+) True G161129
TU218351 lncRNA downstream 234109 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA downstream 234355 28030859 ~ 28032190 (+) False LOC111194734
TU218353 lncRNA downstream 234894 28031398 ~ 28032184 (+) False LOC111194734
TU218493 lncRNA downstream 569664 28366168 ~ 28394028 (+) False G161243
XM_015600826.2 mRNA upstream 6430 27762391 ~ 27778466 (+) False slc33a1
XM_007231546.3 mRNA upstream 6430 27762407 ~ 27778466 (+) True slc33a1
XM_007232086.2 mRNA upstream 355115 27423510 ~ 27429781 (+) True ssr3
XM_022679793.1 mRNA upstream 580986 27202494 ~ 27203910 (+) True LOC111194784
XM_007232092.3 mRNA upstream 665632 27109672 ~ 27119264 (+) True ccnl1
XM_022679983.1 mRNA downstream 8559 27805063 ~ 27965690 (+) True plch1
XM_007231544.3 mRNA downstream 172554 27969058 ~ 27977682 (+) True LOC103040346
XM_007231561.2 mRNA downstream 274987 28071491 ~ 28077732 (+) True LOC103045576
XM_022679804.1 mRNA downstream 377106 28173610 ~ 28177986 (+) True LOC107196882
XM_022679806.1 mRNA downstream 377331 28173835 ~ 28177986 (+) False LOC107196882
XR_002651269.1 other upstream 667685 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 877269 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1029583 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3665071 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 4930815 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 825624 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 949192 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1274316 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 3078534 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 3078614 30875118 ~ 30878312 (+) False hmgn2

Expression Profile