RNA id: XR_002651201.1


Basic Information

Item Value
RNA id XR_002651201.1
length 492
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC111194734
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28030613 ~ 28035195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aactgttttgtttctgttctgTAAAATCAGGCCCAGTTCCAAAAGACACAACATCCTCAGTGTCCTGGAGCTCCAGCTGAAGCACTGGCCACCTTCTCCATCCCCACCCAAAAGAGGTACTTCTAAGGCAGCTAGTTGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAAGCCATAGAACATCCTGGTTCAGATGTACAGTTAGGAACCACGCCTTCATCTTCTGTTCTTCTGGACCTTCCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCAtcctgctgtgtgtgagaggtgacCCTTCAACACCAGCACGGAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTATGACCCCTGGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTCAGTCaggtaccatataaaacaataataataataattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218309 lncRNA upstream 137382 27893087 ~ 27893477 (+) True G161129
TU218294 lncRNA upstream 235216 27785032 ~ 27795643 (+) False c18h3orf33
TU218293 lncRNA upstream 247670 27780854 ~ 27783189 (+) True G161115
TU218251 lncRNA upstream 403437 27602859 ~ 27627422 (+) True G161080
TU218250 lncRNA upstream 444089 27586529 ~ 27586770 (+) True G161079
TU218493 lncRNA downstream 333978 28366168 ~ 28394028 (+) False G161243
TU218490 lncRNA downstream 356461 28388651 ~ 28392768 (+) False G161243
TU218491 lncRNA downstream 356461 28388651 ~ 28392768 (+) True G161243
XR_002651280.1 lncRNA downstream 611131 28643321 ~ 28652309 (+) False LOC111194802
XR_002651279.1 lncRNA downstream 616315 28648505 ~ 28652309 (+) True LOC111194802
XM_007231544.3 mRNA upstream 53177 27969058 ~ 27977682 (+) True LOC103040346
XM_022679983.1 mRNA upstream 65169 27805063 ~ 27965690 (+) True plch1
XM_007231545.3 mRNA upstream 234355 27784896 ~ 27796504 (+) True c18h3orf33
XM_015600826.2 mRNA upstream 252393 27762391 ~ 27778466 (+) False slc33a1
XM_007231561.2 mRNA downstream 39301 28071491 ~ 28077732 (+) True LOC103045576
XM_022679804.1 mRNA downstream 141420 28173610 ~ 28177986 (+) True LOC107196882
XM_022679806.1 mRNA downstream 141645 28173835 ~ 28177986 (+) False LOC107196882
XM_022679803.1 mRNA downstream 148492 28180682 ~ 28184907 (+) True LOC103044051
XM_022679808.1 mRNA downstream 153560 28185750 ~ 28195714 (+) False LOC111194790
XR_002651269.1 other upstream 913648 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 1123232 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1275546 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 3911034 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 5176778 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 589938 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 713506 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 1038630 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 2842848 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 2842928 30875118 ~ 30878312 (+) False hmgn2

Expression Profile