RNA id: TU218493


Basic Information

Item Value
RNA id TU218493
length 1499
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G161243
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28366168 ~ 28394028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttctttaattttaccaaattgaaaaactctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactgaactgcttgaatttttacaccaggagtgaaataaagtaagagtggcaaaagcagtgtgtaagactggtggaggagaacatggtaagatgcatgaaaactgtgattaaaaaacagggttattccaccaaatattgatttctgaactcttaaaactttatgaatataaacttgttttctttgtattatttgaggtctgaaagctctgcatcttttttttgttttttcagccatttctcattttttgcaaataaatgctctaaatgacttttttttattttttatttgggagaaatgttgaccgtagtttatagaataaaacaacaatgttcattttaatcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtggtcttttcattttttccagagctgtatatacatcaGTAGAGATGATTGGATTTGTGcattattttaaacagatatttaattagtattattaagtaaactgcagatgagatctgattattattaaatatagctATTATCATTAGCAACCTTATAGTCCTGTCCATATTCTCAGTTCATTTTAAACTGCCTGAGGTGCGTAAAAGGgtttgatttatatttttgcgcagtattattaaaaatatattaattaaaatatcaagAAACATCAAATATGATGTGCTGGTCCATGCTAGAGAATTGTTCAGCCAGGTCTGGATCATCAGGTTCCTGTTGAGTTCTGCTTCTCTTAAAGTGAGTACAgcactggactggactggactggactgggcGGAGCTTCCATCACTTTATTAAAGCTGCAGACAGGCTGTTGTTAGTCGCTGTGTTGAACACAAGCCAGAATATAGAGCTTCCATAGTTTCTGCAGAGTTTAGTCTCCAGGTCTGTTGGCAGCCATGTTCTGAGGTTCGAATGGAACGGATTAGCACGAACTGTTCAGTCATGTGAAGATCAGTTTGGCTGATCCATGCAGTCTTCCAATATCCACCAGTAACTCCCGCTGAGCCCCATAGCTCTGCATTGctctgttcttctctctctctctctctctctctgtaggtgtTCATGTGAAGGAAACGGAGCTCATGTTCATACGTTGGTCTCCAGGCCCTGCAGGCGGTCCATCCTCTCCATGTTCTTCTCGATGGTGGCCTGGCAGGTGATTGGCTGGGCGCACTCAGACAGAAACCAGCCCCTCTCTCCGTCTCGCAGACGCATGCCCTCGTACCAGCCTGGAAGAGAAGAAATCACATGTGCACAATTTCAAATATGGGTGACTTAAATTCACACTATGGATAATTGTGGTTGAAtgatatgaataaataaaagtgtcaaaatcactgtttttccttatttattttatttaattgattttctacagtgtagattaatattaaagacatggaaAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218351 lncRNA upstream 330973 28030613 ~ 28035195 (+) True LOC111194734
XR_002651201.1 lncRNA upstream 333978 28030859 ~ 28032190 (+) False LOC111194734
TU218353 lncRNA upstream 333984 28031398 ~ 28032184 (+) False LOC111194734
TU218309 lncRNA upstream 472691 27893087 ~ 27893477 (+) True G161129
TU218294 lncRNA upstream 570525 27785032 ~ 27795643 (+) False c18h3orf33
XR_002651280.1 lncRNA downstream 249293 28643321 ~ 28652309 (+) False LOC111194802
XR_002651279.1 lncRNA downstream 254477 28648505 ~ 28652309 (+) True LOC111194802
XR_002651281.1 lncRNA downstream 254479 28648507 ~ 28652309 (+) False LOC111194802
XR_002651278.1 lncRNA downstream 255820 28649848 ~ 28652309 (+) False LOC111194802
XR_002651282.1 lncRNA downstream 258524 28652552 ~ 29213664 (+) True LOC111194803
XM_022679820.1 mRNA upstream 82850 28255972 ~ 28283318 (+) True gpr149
XM_022679808.1 mRNA upstream 170454 28185750 ~ 28195714 (+) False LOC111194790
XM_022679807.1 mRNA upstream 170454 28191379 ~ 28195714 (+) True LOC111194790
XM_022679803.1 mRNA upstream 181261 28180682 ~ 28184907 (+) True LOC103044051
XM_022679804.1 mRNA upstream 188182 28173610 ~ 28177986 (+) True LOC107196882
XM_007251835.3 mRNA downstream 351668 28745696 ~ 28759007 (+) True fam219b
XM_015606482.2 mRNA downstream 374578 28768606 ~ 28859096 (+) True arid3b
XM_022679823.1 mRNA downstream 560689 28954717 ~ 28969395 (+) True LOC103037946
XM_022679825.1 mRNA downstream 624032 29018060 ~ 29063139 (+) True LOC103022881
XM_022679824.1 mRNA downstream 739600 29133628 ~ 29143190 (+) True LOC103023184
XR_002651269.1 other upstream 1248957 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 1458541 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 1610855 26749379 ~ 26755313 (+) False LOC103021732
TU217233 other upstream 4246343 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 5512087 22853412 ~ 22854081 (+) True G160134
TU218548 other downstream 228100 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 351668 28745696 ~ 28759007 (+) False fam219b
TU218604 other downstream 676792 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 2481010 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 2481090 30875118 ~ 30878312 (+) False hmgn2

Expression Profile