RNA id: TU218583


Basic Information

Item Value
RNA id TU218583
length 359
lncRNA type inter_gene
GC content 0.23
exon number 1
gene id G161314
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28886442 ~ 28886800 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tGATAATTACACAGACAATGTTTTTAATAGCAATACaaacaataacattaataatattaatttaacatCATATAAAACAAAGTGTGTGAAACAACCCttaacaatatacattataaaatattaatatttatctaataaaaaaaaaaaatatatatatatatatatatcattcaCAGTGAGTGGTCATGAACaattcctcacacacacaaaaaaaaccctcatatcTTGAtaatggcaactttacaggaaacggaaaacttattttaatgtaaaaatatttgtagatgTCTTTTCTAGTCCTTTTGAAACATTTCTATAGGTCAATTTATCCTAATATTTTTTGACAAAATGATAATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218566 lncRNA upstream 122399 28668173 ~ 28764043 (+) True G161302
XR_002651280.1 lncRNA upstream 234133 28643321 ~ 28652309 (+) False LOC111194802
XR_002651279.1 lncRNA upstream 234133 28648505 ~ 28652309 (+) True LOC111194802
XR_002651281.1 lncRNA upstream 234133 28648507 ~ 28652309 (+) False LOC111194802
XR_002651278.1 lncRNA upstream 234133 28649848 ~ 28652309 (+) False LOC111194802
TU218581 lncRNA downstream 172 28886972 ~ 28889126 (+) True G161312
TU218582 lncRNA downstream 2570 28889370 ~ 28890244 (+) True G161313
TU218700 lncRNA downstream 315553 29202353 ~ 29202589 (+) True G161414
TU218703 lncRNA downstream 321163 29207963 ~ 29208290 (+) True G161417
TU218704 lncRNA downstream 323464 29210264 ~ 29214735 (+) True LOC111194801
XM_015606482.2 mRNA upstream 27346 28768606 ~ 28859096 (+) True arid3b
XM_007251835.3 mRNA upstream 127435 28745696 ~ 28759007 (+) True fam219b
XM_022679985.1 mRNA upstream 500025 28300719 ~ 28386417 (+) True dhx36
XM_022679820.1 mRNA upstream 603124 28255972 ~ 28283318 (+) True gpr149
XM_022679808.1 mRNA upstream 690728 28185750 ~ 28195714 (+) False LOC111194790
XM_022679823.1 mRNA downstream 67917 28954717 ~ 28969395 (+) True LOC103037946
XM_022679825.1 mRNA downstream 131260 29018060 ~ 29063139 (+) True LOC103022881
XM_022679824.1 mRNA downstream 246828 29133628 ~ 29143190 (+) True LOC103023184
XM_007251840.3 mRNA downstream 265496 29152296 ~ 29159185 (+) True LOC103038575
XM_022679826.1 mRNA downstream 312649 29199449 ~ 29200211 (+) True LOC111194800
XR_002651275.1 other upstream 127435 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 261657 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 1769231 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 1978815 26905244 ~ 26907627 (+) True G160919
TU217966 other upstream 2131129 26749379 ~ 26755313 (+) False LOC103021732
TU218604 other downstream 184020 29070820 ~ 29116795 (+) True G161331
XR_002651288.1 other downstream 1988238 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1988318 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1988318 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 3182062 32068862 ~ 32148190 (+) True G162017

Expression Profile