RNA id: XM_022679822.1


Basic Information

Item Value
RNA id XM_022679822.1
length 2508
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC103037190
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 28886911 ~ 28941387 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACAGCACTTTCACGTTTTCTTTGCTTGGAGTGCAGCATGCCTTACACAGCTCTCTCTACGGCACTGCTGGCTTTAATATGGACTCAGGTTGTCCACTCCAACTTGGACAACCATAAGAATGCAGCCAGGATCCAAATAAAAGCAGaaGACGTATTTAAAAGGTATGATATCAGACAGCCGGGAGAGATGTGGAAGCTGGTGAAGGATCCTCTCAGTTCAGATATCTACGCAGGTGGTCCGAATGGCCTGTATAATTTACATCAAAATGAGTTAAAAATGGTAAAACCTAGCATCTCACTGCTGACTGAAGGAACGAATAGAACGCTGTTCATCTGTGAAAAGATTAAGGAGAAAGATCATAAATGCTGTTTCCTGaaACCGGAATCCGATCAGAATTGCTTTAACGTGGCCCAAGAGGTGCAAATTAATGAAGCTTCCCTGCTTGTTGACAGGACACTATTTTTCACCATGTCCGGTGATCTTAATGCACAAGCCAACTTGGGGCTCTACAAACAAAGCTCCAAAACCAGCTACACTTGGCCACAGGGAACAACAGTGGCacaaaaatatgtgaaaatCATCACAAAAAGCACAACCCTGGATGGCAAGCTGTACTCCTTTCAAACTGTGAAGAATTCGAACCCGGACCCGGAAACGCCTTTATGGATTTCTCAAGTTTCTCACTACTGCATGGGTGATAAAGGGGGAAGTAAAAGCTTGCTGCAGTTCCGCTGGACATCCATGCTGAGCGCTCGTCTGTTCTGtgggaaaaaagagaatagGACGACCTTCACAGAGCTGCTGGACGTTGCAGAATTGGAGATCTCGGGCGACACCAAAATTTTTGCACTCTTCAAGAATGTATATAACATCAGAGCTGTGTGCGTTTATAAAATGTCTGAGATCGAGCGGATCTTCAAGAGCGCCAAGTTCAGTTATCCCAAAGACTCTCACATCTCACAGAATCCTGGAGAGTGTGTTTCAAACAGTCAGTCCTTACATGCAACTGTTCTGAAGTTCATGGAACAGCGTCCGGAGATGGAGGAATGGATTTTGCCTGAGAGCGACCCCCTGGTCTTCCGCCACCACTTGTACTCACACTTACAGGTGGACAATGTCAACAATAAAGATGTCCTGTTAATGACGCTAGAAAATGGCAGGATTCATAAAGTGCTGAAGGAAGAAAATGGTCATTTCATTATCGCTGAATACCTGCCATTCGATAAGAAGACCCACATCCACAGCATGCTTCTGGACAGATCTGAGAAAACGCTGTACGTGAGCAACAGCAGCCAGGTGGTCACGATCAACCTGCGGGACTGCAACCACTATGGGGATGCTTTTAATGCATGTGGTATGGCTAATGATCCTTACTGCAGCTGCAAGAATTCATCTGGAGCCTCGGCTGAAGGTGTGAGAAGGGAAGATCACTTTTTTTCTGCAGACGGAGGACCAAGCATCCAGAGGCTCAGCAGCAGCCCCAGATCCCCAGACCTGATCCCTCGACACTCCAAATACTATCTTACTTGTCCCACACTTTCCAAGCATGCTTCCTACACCTGGATTCATGACAACAAAACTGTATCAGAGTGCGTCTCCACTGAAGAGCAGTGTCTCCTGCTAATAGAAAGCATGAGCAAAAAGGACGAAGGATGGTATGTCTGCCAAGCCACAGAGCAAGAGCAGTCATGGACAGTCACATCTAATCTCTTGGTGGAAAATGGTGCCTCCCACCTGAGAGTGGCTCCTGCAGTGATGACCTGTCTTCTTCTCCTGATCAGTATGATAGTATTCTAGCTGTTTGTTTAGAGTTCATGATGTTGGAGTGTGTGTACCCCTTATTCTTAGTCGTTCACTGCTGATAACAGCACTTTTAAAACAATGGAAGGCTGTTTTTTACCATTGCGCATTAGCTCAGACTGATGAGACTAAAGACCCTATTTTAGCATTCTATAGCCGACCGTCAATGGCTCACCGTGCAGCATATCACTTGCCATTTGTTTTAAGAGCCAGATTtttgtgctctgactttggcaaattggtattttaacggcgcaTTGCTTCTGTGCTTCTTAGCAGAAGAAAAATGACCTGCTCGTGCATCTctacagtgtgaacgagcatgTACTTTTTTTTCGGCTGAAAAGCTCAGAAGcactgcgccgttaaaataccaatctgccaaagtcagagcacatctggctcttaaaagaAATGGCAAGTAAAAAGCTGATTTACAGGAACcataattttagtttatttgataTCCTGTTTATTGCTGACTGtgttgccaaaatagcaatgaacatgTTGTCTGTGGTCTAggtttttcagtcagtggccaCCAACAGTGGTTTCcgttgccaaaatagcaatacaccagaaatgtacctgaacacacctcatttcaggACTACAGCACCCATCAGCAAAGATATATTCGCAATTGCTGTCTCTATTTAAACTGTTGGCGGAGTGTAAGCCTTGCGcatggtgtaagatagggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218657 lncRNA downstream 27528 28822717 ~ 28862392 (-) True G161377
TU218646 lncRNA downstream 140872 28745699 ~ 28749048 (-) True G161367
TU218641 lncRNA downstream 162302 28727183 ~ 28727618 (-) True G161363
TU218608 lncRNA downstream 236973 28593500 ~ 28652947 (-) True LOC111194804
TU218607 lncRNA downstream 297368 28592165 ~ 28592552 (-) True G161334
TU218683 lncRNA upstream 122440 29063827 ~ 29064178 (-) True G161400
TU218697 lncRNA upstream 255860 29197247 ~ 29197677 (-) True G161411
TU218707 lncRNA upstream 270089 29211476 ~ 29213081 (-) True G161419
TU218728 lncRNA upstream 338356 29279743 ~ 29308445 (-) False G161432
TU218727 lncRNA upstream 352145 29293532 ~ 29308445 (-) False G161432
XM_007251834.2 mRNA downstream 182775 28703879 ~ 28707145 (-) True p2ry1
XM_007237286.3 mRNA downstream 265140 28622083 ~ 28624780 (-) True rap2b
XM_007237285.3 mRNA downstream 407700 28393281 ~ 28482220 (-) False arhgef26
XM_007237282.3 mRNA downstream 407700 28393281 ~ 28482220 (-) True arhgef26
XM_007237281.3 mRNA downstream 596784 28292230 ~ 28293136 (-) True LOC103043986
XM_007251844.3 mRNA upstream 469776 29411163 ~ 29446961 (-) True ulk3
XM_007251846.3 mRNA upstream 471454 29412841 ~ 29446961 (-) False ulk3
XM_007251848.3 mRNA upstream 560728 29502115 ~ 29514077 (-) True larp6
XM_022679986.1 mRNA upstream 662348 29603735 ~ 29604672 (-) True LOC111194841
XM_022679988.1 mRNA upstream 820281 29761668 ~ 29765504 (-) True LOC111194843
XR_002651283.1 other downstream 237136 28650931 ~ 28652784 (-) False LOC111194804
TU218137 other downstream 1770667 27112698 ~ 27119253 (-) True G160979
TU217810 other downstream 3150558 25738881 ~ 25739362 (-) False G160715
TU217811 other downstream 3150558 25738881 ~ 25739362 (-) True G160715
TU217773 other downstream 3287241 25600686 ~ 25602679 (-) False LOC103041696
TU219094 other upstream 1374219 30315606 ~ 30325858 (-) True G161711
TU219720 other upstream 3712787 32654174 ~ 32658387 (-) False tap1
TU219721 other upstream 3712787 32654174 ~ 32658387 (-) False tap1
TU219984 other upstream 5156541 34097928 ~ 34100949 (-) False LOC103042403
TU220593 other upstream 7197516 36138903 ~ 36140853 (-) True c18h15orf65

Expression Profile