RNA id: TU218703


Basic Information

Item Value
RNA id TU218703
length 328
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G161417
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29207963 ~ 29208290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgcgcatgcgcgaatatttgcggccgtctgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatattagcggccgactgcgcatgcgcgaatatttgcggccgactgcgcatgcgcgaatatttgcggccgtctgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatatttgcggcgactgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatattagcggccgactgcgcatgcgcgaatattagcggccgactgcgcatgcgcgaatattagcggccgtctgcgcatgcgcgaatattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218700 lncRNA upstream 5374 29202353 ~ 29202589 (+) True G161414
TU218582 lncRNA upstream 317719 28889370 ~ 28890244 (+) True G161313
TU218581 lncRNA upstream 318837 28886972 ~ 28889126 (+) True G161312
TU218583 lncRNA upstream 321163 28886442 ~ 28886800 (+) True G161314
TU218566 lncRNA upstream 443920 28668173 ~ 28764043 (+) True G161302
TU218704 lncRNA downstream 1974 29210264 ~ 29214735 (+) True LOC111194801
XR_002651276.1 lncRNA downstream 2072 29210362 ~ 29212876 (+) False LOC111194801
XR_002651277.1 lncRNA downstream 2078 29210368 ~ 29212876 (+) False LOC111194801
TU218716 lncRNA downstream 124821 29333111 ~ 29354291 (+) True G161425
TU218780 lncRNA downstream 275224 29483514 ~ 29490820 (+) True G161476
XM_022679826.1 mRNA upstream 7752 29199449 ~ 29200211 (+) True LOC111194800
XM_007251840.3 mRNA upstream 48778 29152296 ~ 29159185 (+) True LOC103038575
XM_022679824.1 mRNA upstream 64773 29133628 ~ 29143190 (+) True LOC103023184
XM_022679825.1 mRNA upstream 144824 29018060 ~ 29063139 (+) True LOC103022881
XM_022679823.1 mRNA upstream 238568 28954717 ~ 28969395 (+) True LOC103037946
XM_022679827.1 mRNA downstream 11176 29219466 ~ 29307913 (+) True csk
XM_007251842.3 mRNA downstream 162775 29371065 ~ 29391966 (+) True LOC103039106
XM_007251843.3 mRNA downstream 190122 29398412 ~ 29401581 (+) True LOC103039409
XM_022679828.1 mRNA downstream 240860 29449150 ~ 29473681 (+) True LOC103023825
XM_007251847.3 mRNA downstream 268395 29476685 ~ 29486014 (+) True tm2d3
TU218604 other upstream 91168 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 448956 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 583178 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2090752 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2300336 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1666748 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1666828 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1666828 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2860572 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 3028026 32236316 ~ 32295029 (+) True G162032

Expression Profile