RNA id: TU218716


Basic Information

Item Value
RNA id TU218716
length 593
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G161425
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29333111 ~ 29354291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgtcacagtttagcccgtgtctgtctcgttgtgtctccctctcctggtctattgtgctcctgcccctctgttttcctgtcatgtgtcccagccatgtgctattgttgtgtttttgtccttgtctccgccctagccctgccctagccattagtgctgtaacctcttgtctcatttgtaaccccgcccccttgttagctcccacaggtgtcccttatgtttgcctgtatataataccccatgtgctccttgttCTGTGTCGTGCTTTGTTTGATCTAGTCCTGTTTCTCTGTCAGAATCttgtttagttgtgtttttgtGCCTTTGAGCCTTTTTGTCTGcagtgttctggtttgttttctttagtttatttatttgtttgattattttgtttgtttgtttaagtctTTTTCTCATATCCTCAtagttcatagtgttttgttttagttaccttttctttatacTATTTCATAGGGTTTtgctcttttgtttattttcttgtttaaatggaaaataaaactaacttgcatttgcatccggccTCCTCCTCTCCGTTACAAAcacatgctggctgagaagcatccaggagaaatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218704 lncRNA upstream 118376 29210264 ~ 29214735 (+) True LOC111194801
XR_002651282.1 lncRNA upstream 119447 28652552 ~ 29213664 (+) True LOC111194803
XR_002651276.1 lncRNA upstream 120235 29210362 ~ 29212876 (+) False LOC111194801
XR_002651277.1 lncRNA upstream 120235 29210368 ~ 29212876 (+) False LOC111194801
TU218703 lncRNA upstream 124821 29207963 ~ 29208290 (+) True G161417
TU218780 lncRNA downstream 129223 29483514 ~ 29490820 (+) True G161476
TU218789 lncRNA downstream 147829 29502120 ~ 29532246 (+) True G161484
TU218809 lncRNA downstream 266106 29620397 ~ 29639626 (+) True G161502
TU218810 lncRNA downstream 270732 29625023 ~ 29646905 (+) True G161503
TU218816 lncRNA downstream 302399 29656690 ~ 29657488 (+) True G161508
XM_022679827.1 mRNA upstream 25198 29219466 ~ 29307913 (+) True csk
XM_022679826.1 mRNA upstream 132900 29199449 ~ 29200211 (+) True LOC111194800
XM_007251840.3 mRNA upstream 173926 29152296 ~ 29159185 (+) True LOC103038575
XM_022679824.1 mRNA upstream 189921 29133628 ~ 29143190 (+) True LOC103023184
XM_022679825.1 mRNA upstream 269972 29018060 ~ 29063139 (+) True LOC103022881
XM_007251842.3 mRNA downstream 16774 29371065 ~ 29391966 (+) True LOC103039106
XM_007251843.3 mRNA downstream 44121 29398412 ~ 29401581 (+) True LOC103039409
XM_022679828.1 mRNA downstream 94859 29449150 ~ 29473681 (+) True LOC103023825
XM_007251847.3 mRNA downstream 122394 29476685 ~ 29486014 (+) True tm2d3
XM_022679832.1 mRNA downstream 167486 29521777 ~ 29598907 (+) True lrrc49
TU218604 other upstream 216316 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 574104 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 708326 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2215900 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2425484 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1520747 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1520827 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1520827 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2714571 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2882025 32236316 ~ 32295029 (+) True G162032

Expression Profile