RNA id: TU218789


Basic Information

Item Value
RNA id TU218789
length 514
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G161484
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29502120 ~ 29532246 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCCATTATAGTGATTTATTTGTACAATAGGAAATGAGCTGTACATGGTCTCTGCTCAGCTGTAAAGGCAAAAGCAAAGCATTTACACACTGGAGCCAGACACCTCACTACCCCATCTCATAGATGCTACACTTGAACAAAGCAGATAGAGCTTCACTTATTCACATCCCTGCTAGAATAGTAACCTCTAAAATAAACCATTATGGTTTAAGAAAGGCAGAAaggtattgtttaaaaaagaaaattaaagataatttaaagaaaattaaaactcaacaAAAACCATCTCTTAAGGGATTACTATTTAACCAAACGGCAGGGAGAGGTTATGGCCACAGAAAGAGCAAAAGTTTCATCGCTGCTTTTTAGGTGCTCAACAATTAATTATCAACAAGGCATATGGTGATGTTCTTATCAAAACCATGTGCCTAAACCACTGTCCACGCCAAAACACGCACACATTAACATTCACAAGGTCAGAatcacacctgttttttttttttttttttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218780 lncRNA upstream 11300 29483514 ~ 29490820 (+) True G161476
TU218716 lncRNA upstream 147829 29333111 ~ 29354291 (+) True G161425
TU218704 lncRNA upstream 287385 29210264 ~ 29214735 (+) True LOC111194801
XR_002651276.1 lncRNA upstream 289244 29210362 ~ 29212876 (+) False LOC111194801
XR_002651277.1 lncRNA upstream 289244 29210368 ~ 29212876 (+) False LOC111194801
TU218809 lncRNA downstream 88151 29620397 ~ 29639626 (+) True G161502
TU218810 lncRNA downstream 92777 29625023 ~ 29646905 (+) True G161503
TU218816 lncRNA downstream 124444 29656690 ~ 29657488 (+) True G161508
TU218822 lncRNA downstream 191648 29723894 ~ 29724121 (+) True G161511
TU218854 lncRNA downstream 281375 29813621 ~ 29814942 (+) True G161532
XM_007251847.3 mRNA upstream 16106 29476685 ~ 29486014 (+) True tm2d3
XM_022679828.1 mRNA upstream 28439 29449150 ~ 29473681 (+) True LOC103023825
XM_007251843.3 mRNA upstream 100539 29398412 ~ 29401581 (+) True LOC103039409
XM_007251842.3 mRNA upstream 110154 29371065 ~ 29391966 (+) True LOC103039106
XM_022679827.1 mRNA upstream 194207 29219466 ~ 29307913 (+) True csk
XM_022679829.1 mRNA downstream 73811 29606057 ~ 29715602 (+) True thsd4
XM_022679830.1 mRNA downstream 73811 29606057 ~ 29715602 (+) False thsd4
XM_007251880.3 mRNA downstream 73811 29606057 ~ 29709112 (+) False thsd4
XM_022679831.1 mRNA downstream 143934 29676180 ~ 29715602 (+) False thsd4
XM_022679850.1 mRNA downstream 197104 29729350 ~ 29734672 (+) False LOC111194806
TU218604 other upstream 385325 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 743113 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 877335 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2384909 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2594493 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1342792 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1342872 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1342872 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2536616 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2704070 32236316 ~ 32295029 (+) True G162032

Expression Profile