Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU218854 |
| length | 1274 |
| lncRNA type | inter_gene |
| GC content | 0.55 |
| exon number | 2 |
| gene id | G161532 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035914.1 |
| NCBI id | CM008317.1 |
| chromosome length | 41377133 |
| location | 29813621 ~ 29816600 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0031667 | response to nutrient levels | biological_process |
| GO:0009991 | response to extracellular stimulus | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU218822 | lncRNA | upstream | 89500 | 29723894 ~ 29724121 (+) | True | G161511 |
| TU218816 | lncRNA | upstream | 156133 | 29656690 ~ 29657488 (+) | True | G161508 |
| TU218810 | lncRNA | upstream | 166716 | 29625023 ~ 29646905 (+) | True | G161503 |
| TU218809 | lncRNA | upstream | 173995 | 29620397 ~ 29639626 (+) | True | G161502 |
| TU218789 | lncRNA | upstream | 281375 | 29502120 ~ 29532246 (+) | True | G161484 |
| XR_002651295.1 | lncRNA | downstream | 55968 | 29870910 ~ 29874312 (+) | True | LOC111194812 |
| TU218957 | lncRNA | downstream | 150359 | 29965301 ~ 30033221 (+) | True | G161599 |
| XR_002651292.1 | lncRNA | downstream | 215981 | 30030923 ~ 30033401 (+) | True | LOC111194809 |
| TU218973 | lncRNA | downstream | 253074 | 30068016 ~ 30127142 (+) | True | G161612 |
| TU218981 | lncRNA | downstream | 325773 | 30140715 ~ 30140944 (+) | True | G161620 |
| XM_022679987.1 | mRNA | upstream | 70594 | 29741061 ~ 29743027 (+) | True | LOC111194842 |
| XM_022679850.1 | mRNA | upstream | 78949 | 29729350 ~ 29734672 (+) | False | LOC111194806 |
| XM_022679849.1 | mRNA | upstream | 78949 | 29729357 ~ 29734672 (+) | True | LOC111194806 |
| XM_022679829.1 | mRNA | upstream | 98019 | 29606057 ~ 29715602 (+) | True | thsd4 |
| XM_022679830.1 | mRNA | upstream | 98019 | 29606057 ~ 29715602 (+) | False | thsd4 |
| XM_022679843.1 | mRNA | downstream | 60832 | 29875774 ~ 29884606 (+) | True | LOC107196975 |
| XM_022679858.1 | mRNA | downstream | 74951 | 29889893 ~ 29898429 (+) | True | LOC103032796 |
| XM_022679833.1 | mRNA | downstream | 86374 | 29901316 ~ 30027748 (+) | True | myo5a |
| XM_022679836.1 | mRNA | downstream | 86374 | 29901316 ~ 30027748 (+) | False | myo5a |
| XM_022679837.1 | mRNA | downstream | 86374 | 29901316 ~ 30027748 (+) | False | myo5a |
| TU218604 | other | upstream | 696826 | 29070820 ~ 29116795 (+) | True | G161331 |
| XR_002651275.1 | other | upstream | 1054614 | 28745696 ~ 28759007 (+) | False | fam219b |
| TU218548 | other | upstream | 1188836 | 28622128 ~ 28624785 (+) | True | G161292 |
| XR_002651269.1 | other | upstream | 2696410 | 27109671 ~ 27117211 (+) | False | ccnl1 |
| TU218064 | other | upstream | 2905994 | 26905244 ~ 26907627 (+) | True | G160919 |
| XR_002651288.1 | other | downstream | 1060096 | 30875038 ~ 30878327 (+) | True | hmgn2 |
| TU219178 | other | downstream | 1060176 | 30875118 ~ 30878312 (+) | False | hmgn2 |
| TU219179 | other | downstream | 1060176 | 30875118 ~ 30878312 (+) | False | hmgn2 |
| TU219503 | other | downstream | 2253920 | 32068862 ~ 32148190 (+) | True | G162017 |
| TU219521 | other | downstream | 2421374 | 32236316 ~ 32295029 (+) | True | G162032 |
