RNA id: TU218858


Basic Information

Item Value
RNA id TU218858
length 342
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G161532
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 29813621 ~ 29816600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaagacgaggaggcggacgcaattgCAAACAAAAGGGGATTTATTACagacaacaaatacaaaataaacatggaataaactgaaaacaaagctgaggaaactggggaacacatggaccactaacagacgtaaaaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218822 lncRNA upstream 89500 29723894 ~ 29724121 (+) True G161511
TU218816 lncRNA upstream 156133 29656690 ~ 29657488 (+) True G161508
TU218810 lncRNA upstream 166716 29625023 ~ 29646905 (+) True G161503
TU218809 lncRNA upstream 173995 29620397 ~ 29639626 (+) True G161502
TU218789 lncRNA upstream 281375 29502120 ~ 29532246 (+) True G161484
XR_002651295.1 lncRNA downstream 54310 29870910 ~ 29874312 (+) True LOC111194812
TU218957 lncRNA downstream 148701 29965301 ~ 30033221 (+) True G161599
XR_002651292.1 lncRNA downstream 214323 30030923 ~ 30033401 (+) True LOC111194809
TU218973 lncRNA downstream 251416 30068016 ~ 30127142 (+) True G161612
TU218981 lncRNA downstream 324115 30140715 ~ 30140944 (+) True G161620
XM_022679987.1 mRNA upstream 70594 29741061 ~ 29743027 (+) True LOC111194842
XM_022679850.1 mRNA upstream 78949 29729350 ~ 29734672 (+) False LOC111194806
XM_022679849.1 mRNA upstream 78949 29729357 ~ 29734672 (+) True LOC111194806
XM_022679831.1 mRNA upstream 98019 29676180 ~ 29715602 (+) False thsd4
XM_007251880.3 mRNA upstream 104509 29606057 ~ 29709112 (+) False thsd4
XM_022679843.1 mRNA downstream 59174 29875774 ~ 29884606 (+) True LOC107196975
XM_022679858.1 mRNA downstream 73293 29889893 ~ 29898429 (+) True LOC103032796
XM_022679833.1 mRNA downstream 84716 29901316 ~ 30027748 (+) True myo5a
XM_022679836.1 mRNA downstream 84716 29901316 ~ 30027748 (+) False myo5a
XM_022679837.1 mRNA downstream 84716 29901316 ~ 30027748 (+) False myo5a
TU218604 other upstream 696826 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1054614 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 1188836 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 2696410 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 2905994 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 1058438 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 1058518 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 1058518 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 2252262 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2419716 32236316 ~ 32295029 (+) True G162032