RNA id: TU219044


Basic Information

Item Value
RNA id TU219044
length 303
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G161677
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30216502 ~ 30216804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgtttcttgtttatttctagttccctttatttcttgtatatttctagtcacgtttagttcttgtttgtttctttgtttattttgtatatatttacgtattattcctttgtatatattcccttaccttgttttgttattatctgtttagtttagcttagttctttgttggttttccctgtttgtttatgtatatagatattttcgttattcccctgttttgtttacttgtttatttgttatttaataaagtcatgtcttacccgtttaaacgtccgcctcccgtctcaccTCGCGTTACAGAA

Function

GO: NA

KEGG:

id description
ko01040 Biosynthesis of unsaturated fatty acids

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218984 lncRNA upstream 2601 30162104 ~ 30213901 (+) False G161622
TU218983 lncRNA upstream 48650 30162104 ~ 30167852 (+) True G161622
TU218981 lncRNA upstream 75558 30140715 ~ 30140944 (+) True G161620
TU218973 lncRNA upstream 89360 30068016 ~ 30127142 (+) True G161612
XR_002651292.1 lncRNA upstream 183101 30030923 ~ 30033401 (+) True LOC111194809
TU219049 lncRNA downstream 34778 30251582 ~ 30252005 (+) True G161682
TU219050 lncRNA downstream 35298 30252102 ~ 30252497 (+) True G161683
TU219053 lncRNA downstream 59782 30276586 ~ 30276833 (+) True G161686
TU219056 lncRNA downstream 60523 30277327 ~ 30287684 (+) False LOC111194810
TU219057 lncRNA downstream 60523 30277327 ~ 30287684 (+) True LOC111194810
XM_022679857.1 mRNA upstream 113525 30090299 ~ 30102977 (+) True LOC103035823
XM_022679845.1 mRNA upstream 127792 30036411 ~ 30088710 (+) True LOC103042250
XM_022679834.1 mRNA upstream 188754 29901316 ~ 30027748 (+) False myo5a
XM_022679847.1 mRNA downstream 136882 30353686 ~ 30414204 (+) True LOC103042463
XM_022679848.1 mRNA downstream 153851 30370655 ~ 30414204 (+) False LOC103042463
XM_022679856.1 mRNA downstream 214643 30431447 ~ 30441876 (+) True lysmd2
XM_022679851.1 mRNA downstream 445078 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA downstream 445078 30661882 ~ 30672269 (+) False LOC111194807
TU218604 other upstream 1099707 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1457495 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 1591717 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3099291 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3308875 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 658234 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 658314 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 658314 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1852058 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 2019512 32236316 ~ 32295029 (+) True G162032

Expression Profile