RNA id: TU219050


Basic Information

Item Value
RNA id TU219050
length 396
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G161683
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30252102 ~ 30252497 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctccattaagatctgcagtctgttagcctagctagcaaaatcattccggcattgtgaatgtaataaataactatcttaagtgaactacagccataatccacatctaatatcaaaccacagatcctaccaaccctaaccagcactaagaaatcaatctgttattaaaaaacagtgattaatttagctcggaaatacagttagcatcgccagttagccgttagctattgcagctaatcctctatgctacctgtcaaaataaaagtctcctgcacaaccgttgcaaaaaatgccctgaatttaatgtttaacgtatttaatattttactttttttttatatttaataaaaattcaaacattttatttgaaaggaaACTATTGTGTAATTGCATATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219049 lncRNA upstream 97 30251582 ~ 30252005 (+) True G161682
TU219044 lncRNA upstream 35298 30216502 ~ 30216804 (+) True G161677
TU218984 lncRNA upstream 38201 30162104 ~ 30213901 (+) False G161622
TU218983 lncRNA upstream 84250 30162104 ~ 30167852 (+) True G161622
TU218981 lncRNA upstream 111158 30140715 ~ 30140944 (+) True G161620
TU219053 lncRNA downstream 24089 30276586 ~ 30276833 (+) True G161686
TU219056 lncRNA downstream 24830 30277327 ~ 30287684 (+) False LOC111194810
TU219057 lncRNA downstream 24830 30277327 ~ 30287684 (+) True LOC111194810
TU219060 lncRNA downstream 24830 30277327 ~ 30287684 (+) False LOC111194810
XR_002651293.1 lncRNA downstream 33792 30286289 ~ 30287396 (+) False LOC111194810
XM_022679857.1 mRNA upstream 149125 30090299 ~ 30102977 (+) True LOC103035823
XM_022679845.1 mRNA upstream 163392 30036411 ~ 30088710 (+) True LOC103042250
XM_022679834.1 mRNA upstream 224354 29901316 ~ 30027748 (+) False myo5a
XM_022679847.1 mRNA downstream 101189 30353686 ~ 30414204 (+) True LOC103042463
XM_022679848.1 mRNA downstream 118158 30370655 ~ 30414204 (+) False LOC103042463
XM_022679856.1 mRNA downstream 178950 30431447 ~ 30441876 (+) True lysmd2
XM_022679851.1 mRNA downstream 409385 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA downstream 409385 30661882 ~ 30672269 (+) False LOC111194807
TU218604 other upstream 1135307 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1493095 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 1627317 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3134891 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3344475 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 622541 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 622621 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 622621 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1816365 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1983819 32236316 ~ 32295029 (+) True G162032

Expression Profile