RNA id: XR_002651293.1


Basic Information

Item Value
RNA id XR_002651293.1
length 802
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC111194810
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30277327 ~ 30287684 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttcttatctctGAAAATAACctaataaaaataaggaaacgtaaaaagaaaatatatatataatataaaataatggtaTTATTAGAAAGGCAGCGACGGTACAAAGAACCGCCCACTACGCCACAACCTCACCAGTAAAAAGCAAGTTAACCACCCACTGCGGAAAAATATGACCAATTAAAAAGTTATCAAGTAAGTTAGTCCAGAGCCACCCACTGCGGAAAAATACAACCAATCACAAGTTAGTAAGCAGATTAGTCCAGAGCTACGTGACAAAGATCGCTCGCACTTACGAGTTGGAAGCTGAGCCAGCCGGATCGCGGCACAGCGGTTGAGCCAGGAGACGGAGCGAGCCGTTTAGAATTTTGGATCTAACAAGTGAATATCGCAGATCAGGAGCTATTAGCCGCTTTTGTTAAAGCTGGGAAACTAATACGCTAGTTTAGCCTTGCCAATCTGCCGAGTGGATTGGACTTTTGGAGTCATCTCATGCGCGGAACCGAGTTTTCGCCGCTGGTTGCCAGATAGTCTGAAACTAAACGATTCCGGATCGGATTTGGCCAGTTTTGATTGGGATACACTGCTGATAAGAATCTGCCGCCTGGTCACGAGAGCCCAGTTGAGTAGGAGACGCGATGGCGAGCCTCAGCCCAAAGGAACTTCGTACCTGAGCCTTAAATCTTGAGTAtcccttctgtttttttacggttggaccttttttttctttcctcctcGTTCCAAGTGAGTTACACTGCGTTACCTGCATAACGAACAGAAACCGATAAACTGATTCTTGGACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219053 lncRNA upstream 9456 30276586 ~ 30276833 (+) True G161686
TU219050 lncRNA upstream 33792 30252102 ~ 30252497 (+) True G161683
TU219049 lncRNA upstream 34284 30251582 ~ 30252005 (+) True G161682
TU219044 lncRNA upstream 69485 30216502 ~ 30216804 (+) True G161677
TU218984 lncRNA upstream 72388 30162104 ~ 30213901 (+) False G161622
TU219066 lncRNA downstream 16354 30303750 ~ 30309405 (+) True G161692
TU219069 lncRNA downstream 28211 30315607 ~ 30321928 (+) True G161695
TU219070 lncRNA downstream 31025 30318421 ~ 30321928 (+) False G161695
TU219072 lncRNA downstream 36764 30324160 ~ 30325854 (+) True G161696
TU219075 lncRNA downstream 45826 30333222 ~ 30335308 (+) True G161697
XM_022679857.1 mRNA upstream 183312 30090299 ~ 30102977 (+) True LOC103035823
XM_022679845.1 mRNA upstream 197579 30036411 ~ 30088710 (+) True LOC103042250
XM_022679834.1 mRNA upstream 258541 29901316 ~ 30027748 (+) False myo5a
XM_022679847.1 mRNA downstream 66290 30353686 ~ 30414204 (+) True LOC103042463
XM_022679848.1 mRNA downstream 83259 30370655 ~ 30414204 (+) False LOC103042463
XM_022679856.1 mRNA downstream 144051 30431447 ~ 30441876 (+) True lysmd2
XM_022679851.1 mRNA downstream 374486 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA downstream 374486 30661882 ~ 30672269 (+) False LOC111194807
TU218604 other upstream 1169494 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1527282 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 1661504 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3169078 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3378662 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 587642 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 587722 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 587722 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1781466 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1948920 32236316 ~ 32295029 (+) True G162032

Expression Profile