RNA id: TU219072


Basic Information

Item Value
RNA id TU219072
length 1668
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G161696
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30324160 ~ 30325854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAGGTCTTTTGCGGTGTAAGACTGTGTCTTTCAGGCTCTTTGCAAATAGTTTGACCCCTTTTTGGTTTAGATGAAGACGGTCATAAAGGTGTCTGTGAAGAATCTGCCCATAAAGCACTACTTGTGTGTTGGGTATGTGGGTACAGAGTCTGTAAATGTCTGAGTTGATGTTGTTGATAGTGTGTTGGGCTGTGTCCAGTCTTGGTAATAAAGTGGAGATGGTGATTGTTGCTGTAGGAAATCTCTTGCTGGCTGTCATTGCTGTTTGTTGGAGTGCTTCAGGTATGTTCCTGCTGTTCTGAGTTAGATCATTGGTCCCCGTATGAATGATGATGTGCTGAATTCCGTTGTAGTTCAGGTTTGATAGTTGATCAATGGCTTTGTTTATGGTTGGAGTCCAGATCTTTgttgaatgtttttttgggaAAAGACGTTTCATGTCTAAATATTTCCCATTAGAATCACACAGAAATAATACATCCTGTGttgtcttctgtgtgtgtggcgttgtgtgtgtgggttccTCAATGTTGAGGGagttaggtgtgagtgtgtgtgtttgtattggtGGGGTAGGTTGAGGTATGGTATGAGGAGAGGGTAGTGTAGGGCGTGGGGGTGAGGAGGTGGGAGAGGTAATGTTAGTGGACCTGGTGCAGTTTTCTCTGGTGCTTGTCTGGCTGTGTTGGGGTATCTGTGCTGGAGTGCTGAGCTGTTGAGTGATTGTGTTTAGTTCCTCTGTTATTCTCCGTAAAACTGTCCTCAGATTCTGATTATCCTCTTCCAGTTCTCTCATGGCCTGATGTAGTTCCCGGATCTCATTCTTATGTTGTAGAACTTCAGTGTAAAGTTCTCCTGCTGgtttgctgctgttgttgttttcctGAGGAGGGCAGGACAGGATTCTCTCTTTAAAATGAGTAAACTCCTGTTCCAATATAGATAGCCCTTCTCTCAGAGTCCTGATGCTGCAGGCCAGTTTAGGTGTGAGCTCCGGCTGTACTCGTGGTGTTGTAGGGCTGTGTACAGATCTGTGTACAGTGTTGTTCACTGGTGTTCTCTGTGAATctgtagtttttctttttgatgCAGCAGATTTCTTCATATTTTGAAAGCAGTTTTGAAAGTTGTGTAAGCTGTTTTCAGGTCCCTGGATCATAACTGTACCgttatgatatatatttattgttaggATGGGGCATGTGTACTCAGCATCTTCATATGTAGTGATTTGTCTGCCTTTGCTTATTCCGTTTTTCTTTATGTAAGTGAAAGAATCACTGATCACTGTATGCCAGTCTGCAGGGTGATGGGTGGAGAAGAGCAGGTTACACATTACCTTTAGATTGTTCTTTGTAGTGAAATCTGCCACTAAAGTTTCTGGGTTGTCAGACAGGATTTTTGTTTTGAATATTTTCCTGGCGTTTGCTGATTTGACGTGCGGTGGATACTGCACCTCGCTGCCGTTCAAGTATAGCGAGTGTCCGCTGGAAGCGCTGGGTCCGCTGGAAGCGCTGGAAGCGGCCGTTTCCAttttccgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgtgtaagtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219069 lncRNA upstream 2232 30315607 ~ 30321928 (+) True G161695
TU219070 lncRNA upstream 2232 30318421 ~ 30321928 (+) False G161695
TU219066 lncRNA upstream 14755 30303750 ~ 30309405 (+) True G161692
TU219056 lncRNA upstream 36476 30277327 ~ 30287684 (+) False LOC111194810
TU219075 lncRNA downstream 7368 30333222 ~ 30335308 (+) True G161697
TU219077 lncRNA downstream 71082 30396936 ~ 30414212 (+) False LOC103042463
TU219139 lncRNA downstream 311203 30637057 ~ 30637297 (+) True G161745
TU219140 lncRNA downstream 334466 30660320 ~ 30660727 (+) True G161746
TU219151 lncRNA downstream 363861 30689715 ~ 30689944 (+) True G161755
XM_022679857.1 mRNA upstream 221183 30090299 ~ 30102977 (+) True LOC103035823
XM_022679845.1 mRNA upstream 235450 30036411 ~ 30088710 (+) True LOC103042250
XM_022679834.1 mRNA upstream 296412 29901316 ~ 30027748 (+) False myo5a
XM_022679847.1 mRNA downstream 27832 30353686 ~ 30414204 (+) True LOC103042463
XM_022679848.1 mRNA downstream 44801 30370655 ~ 30414204 (+) False LOC103042463
XM_022679856.1 mRNA downstream 105593 30431447 ~ 30441876 (+) True lysmd2
XM_022679851.1 mRNA downstream 336028 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA downstream 336028 30661882 ~ 30672269 (+) False LOC111194807
TU218604 other upstream 1207365 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1565153 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 1699375 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3206949 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3416533 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 549184 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 549264 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 549264 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1743008 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1910462 32236316 ~ 32295029 (+) True G162032

Expression Profile