RNA id: TU219139


Basic Information

Item Value
RNA id TU219139
length 241
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G161745
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30637057 ~ 30637297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAAGGTATCTGTAGGACTTGACCACCTCAACAtcgaccccctcgatggagattggctgctgagcagagggcctggacctcctgaagtctatgcacatctccttggttttggagatgttcagctgcaGATGGTTCATCTTGCACCAAACCACAAATTCCTCAACCAGGtttctgtactctctctcatcACCATTACGCACACACCCCACGATTGCAGTGTCGTCAGAGAAGTTCTGcatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219077 lncRNA upstream 222845 30396936 ~ 30414212 (+) False LOC103042463
TU219075 lncRNA upstream 301749 30333222 ~ 30335308 (+) True G161697
TU219072 lncRNA upstream 311203 30324160 ~ 30325854 (+) True G161696
TU219069 lncRNA upstream 315129 30315607 ~ 30321928 (+) True G161695
TU219070 lncRNA upstream 315129 30318421 ~ 30321928 (+) False G161695
TU219140 lncRNA downstream 23023 30660320 ~ 30660727 (+) True G161746
TU219151 lncRNA downstream 52418 30689715 ~ 30689944 (+) True G161755
TU219150 lncRNA downstream 58242 30695539 ~ 30696723 (+) True G161754
TU219159 lncRNA downstream 122047 30759344 ~ 30796827 (+) True G161763
TU219175 lncRNA downstream 208433 30845730 ~ 30846030 (+) True G161775
XM_022679856.1 mRNA upstream 195181 30431447 ~ 30441876 (+) True lysmd2
XM_022679847.1 mRNA upstream 222853 30353686 ~ 30414204 (+) True LOC103042463
XM_022679848.1 mRNA upstream 222853 30370655 ~ 30414204 (+) False LOC103042463
XM_022679857.1 mRNA upstream 534080 30090299 ~ 30102977 (+) True LOC103035823
XM_022679845.1 mRNA upstream 548347 30036411 ~ 30088710 (+) True LOC103042250
XM_022679851.1 mRNA downstream 24585 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA downstream 24585 30661882 ~ 30672269 (+) False LOC111194807
XM_022679853.1 mRNA downstream 29266 30666563 ~ 30672269 (+) False LOC111194807
XM_022679855.1 mRNA downstream 160841 30798138 ~ 30800224 (+) True LOC111194808
XM_015602150.2 mRNA downstream 217261 30854558 ~ 30867488 (+) False dhdds
TU218604 other upstream 1520262 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1878050 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 2012272 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3519846 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3729430 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 237741 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 237821 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 237821 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1431565 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1599019 32236316 ~ 32295029 (+) True G162032

Expression Profile