RNA id: TU219150


Basic Information

Item Value
RNA id TU219150
length 1161
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G161754
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30695539 ~ 30696723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctaaaaccaggtgtttcagtttcattgtccaacccctatatatgtgtgtttgtgtagttgtgtgtgtgagcgcaaCACTTCTCCTCGGCTGTTTGATCTTTGATCTGTCACTTTTAGGCTCGTATTCTTCAGCACCGTCGTGAGGAAAGGCACTTTCTAAGGACTTTTAAGCTCCGCTGTAGATTCTTAACTAACACTCTTTCAACTTCacactttcaaaaaaaaaagaaaaaaaaattgaggttaaaataatgtttaaatattttataaacgCTAAAAGACTAAACAACTAAAGAAAACTTAACATCTAAAAGCGTATGGGGAGATATACAAGTCGAGTACGAGTTTTGAGAGTTTTACGAGTTTTAGGCGATGtctcgttttattttttttagtcatcTTCCTTGTAGTTTCATCTCTACCTCCAACGATTCTCCAACAAAACGCAAGTTTGGGGTTCAATCGCTGAAGGgagggtacaaaaaaaaaaaaaaaaaacgccagccaaaaataaaacaaaacacaaaaatacgtAAAACAAAAATGCTACAACCAAAGCATCTTCTCTTCTTCCGAAGGCatattttcaatatatatatacacaaacacacacaataactgTGCTACTCACTCGTGATCTGCTACCATACTTTCCTGTCAGCatcacaaaccaaacaaaacctcTGTCCTCGGAGTTCCGTCAGGACAAAATGCACTTAAACcccgtttacacctggtcactttgtGTAACTAGTGTTTGGATTGCATCCTAAAATGGTTTTTCAAGTGCGTCTCAGAACTTCTGAAGTGATTTAGTGATTCGATTTATATTGGTTTTAAATGTGACTCAAACAACCTTCTGAACTGGTTTGAGTTTTGGGATTTGTATTCGTTTTAAATgttgtctcagaccaccttctgaagATGTTTGTTTGCGTGATCTACATTTGTATTGGTttcaaatgtgtctcagaccacctcctgaagtgattTGTTAAGAAATGTCTGTTTCAAATTGATCTCAGACCACCTGCTGAAGGGGTTTGTTTGCATGATCTGCATTTGTATTAACTTTAAATGTCTCAGACCACATTCTGAAGTGATTTCTTGAGGGATCTCATTTTTATGTTTCAAATtgatctcagaccaccttctgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219151 lncRNA upstream 5595 30689715 ~ 30689944 (+) True G161755
TU219140 lncRNA upstream 34812 30660320 ~ 30660727 (+) True G161746
TU219139 lncRNA upstream 58242 30637057 ~ 30637297 (+) True G161745
TU219077 lncRNA upstream 281327 30396936 ~ 30414212 (+) False LOC103042463
TU219075 lncRNA upstream 360231 30333222 ~ 30335308 (+) True G161697
TU219159 lncRNA downstream 62621 30759344 ~ 30796827 (+) True G161763
TU219175 lncRNA downstream 149007 30845730 ~ 30846030 (+) True G161775
TU219172 lncRNA downstream 170542 30867265 ~ 30871934 (+) True dhdds
TU219173 lncRNA downstream 170542 30867265 ~ 30894506 (+) False dhdds
TU219181 lncRNA downstream 193610 30890333 ~ 30915250 (+) False LOC103039351
XM_022679851.1 mRNA upstream 23270 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA upstream 23270 30661882 ~ 30672269 (+) False LOC111194807
XM_022679853.1 mRNA upstream 23270 30666563 ~ 30672269 (+) False LOC111194807
XM_022679856.1 mRNA upstream 253663 30431447 ~ 30441876 (+) True lysmd2
XM_022679848.1 mRNA upstream 281335 30370655 ~ 30414204 (+) False LOC103042463
XM_022679855.1 mRNA downstream 101415 30798138 ~ 30800224 (+) True LOC111194808
XM_015602150.2 mRNA downstream 157835 30854558 ~ 30867488 (+) False dhdds
XM_007236249.3 mRNA downstream 157838 30854561 ~ 30867488 (+) False dhdds
XM_007236248.3 mRNA downstream 178342 30875065 ~ 30878327 (+) False hmgn2
XM_015602154.2 mRNA downstream 274449 30971172 ~ 30983860 (+) True LOC103039032
TU218604 other upstream 1578744 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1936532 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 2070754 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3578328 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3787912 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 178315 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 178395 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 178395 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1372139 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1539593 32236316 ~ 32295029 (+) True G162032

Expression Profile