RNA id: TU219151


Basic Information

Item Value
RNA id TU219151
length 230
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G161755
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30689715 ~ 30689944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttatttcaatccagtgttgcattaattaatttttcaccaagatcttgcagcagcattgatgatggtagagtctgaccactgcacaaagcagctcttctccatccagcacatcccaaagattctcaatgaggttaagatctggactctgtggtgaactctctcaatccatgtgtgaaaatgatgatctcatgatccctgaaccctgaactctttcacaattccagccccat

Function

GO:

id name namespace
GO:0009250 glucan biosynthetic process biological_process
GO:0006073 cellular glucan metabolic process biological_process
GO:0033692 cellular polysaccharide biosynthetic process biological_process
GO:0006112 energy reserve metabolic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0044264 cellular polysaccharide metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0005976 polysaccharide metabolic process biological_process
GO:0005977 glycogen metabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0034637 cellular carbohydrate biosynthetic process biological_process
GO:0044042 glucan metabolic process biological_process
GO:0000271 polysaccharide biosynthetic process biological_process
GO:0016051 carbohydrate biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219140 lncRNA upstream 28988 30660320 ~ 30660727 (+) True G161746
TU219139 lncRNA upstream 52418 30637057 ~ 30637297 (+) True G161745
TU219077 lncRNA upstream 275503 30396936 ~ 30414212 (+) False LOC103042463
TU219075 lncRNA upstream 354407 30333222 ~ 30335308 (+) True G161697
TU219072 lncRNA upstream 363861 30324160 ~ 30325854 (+) True G161696
TU219150 lncRNA downstream 5595 30695539 ~ 30696723 (+) True G161754
TU219159 lncRNA downstream 69400 30759344 ~ 30796827 (+) True G161763
TU219175 lncRNA downstream 155786 30845730 ~ 30846030 (+) True G161775
TU219172 lncRNA downstream 177321 30867265 ~ 30871934 (+) True dhdds
TU219173 lncRNA downstream 177321 30867265 ~ 30894506 (+) False dhdds
XM_022679851.1 mRNA upstream 17446 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA upstream 17446 30661882 ~ 30672269 (+) False LOC111194807
XM_022679853.1 mRNA upstream 17446 30666563 ~ 30672269 (+) False LOC111194807
XM_022679856.1 mRNA upstream 247839 30431447 ~ 30441876 (+) True lysmd2
XM_022679847.1 mRNA upstream 275511 30353686 ~ 30414204 (+) True LOC103042463
XM_022679855.1 mRNA downstream 108194 30798138 ~ 30800224 (+) True LOC111194808
XM_015602150.2 mRNA downstream 164614 30854558 ~ 30867488 (+) False dhdds
XM_007236249.3 mRNA downstream 164617 30854561 ~ 30867488 (+) False dhdds
XM_007236248.3 mRNA downstream 185121 30875065 ~ 30878327 (+) False hmgn2
XM_015602154.2 mRNA downstream 281228 30971172 ~ 30983860 (+) True LOC103039032
TU218604 other upstream 1572920 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 1930708 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 2064930 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3572504 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3782088 26905244 ~ 26907627 (+) True G160919
XR_002651288.1 other downstream 185094 30875038 ~ 30878327 (+) True hmgn2
TU219178 other downstream 185174 30875118 ~ 30878312 (+) False hmgn2
TU219179 other downstream 185174 30875118 ~ 30878312 (+) False hmgn2
TU219503 other downstream 1378918 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1546372 32236316 ~ 32295029 (+) True G162032

Expression Profile