RNA id: TU219173


Basic Information

Item Value
RNA id TU219173
length 2875
lncRNA type read_through
GC content 0.37
exon number 2
gene id dhdds
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30854558 ~ 30894506 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagcacttttagccgatgctcccaacaggcttacagtgaTATCTGTATGGGGCACAAAGTTATACCTATGCAAAGAAACTACTATTTTCACTCCATTAACAAGCTTAAAATAGGGGCTCCAAGTGATCCAACAGACCAAGGTGCTGCccctatgatcgggagatcgctggttcgaatcccggtcatgcagcttgccatcagctgccggagccctgagagagcacagttggttttgctctctctgtctgggtgggtacagtagatggtgctctctccccacatcactccaaagggtgatgtcgatcagcacaaggctgcgtctgtgagctgatgtatcagaaccgagtcgctgcgctttcctccaagtgtgctgtgatgctactcggcagttTAAAaggaggcagagtctgacttcacatgtattagaggaggcatgtgctagtctttattactagtgatagggggaatccTTATGAGTGTGTTGAGTGATTGGGTTAAGTAattggagaaaatgggatacaaattagtaatatatttttataaaaacacagtttatacaCACAATAACTTGAGGTAGGATatgggaacagattgcaaaatgaaaTCCTTGGAAATGCATAAATATTACAGAGTTTGAATTCATGCATGTTCACTTTGAGCTTGTTGTAAACAGGGTCAAATTGCggtaaaaataatgatttctttgcatgggcaatgctatgcccctatcactagcattgtaagcctgttgggaatGTAAGCTAAAAGTGCTCTATTTTGGAAttctgggggtgaatggaggtgggctattcaacagaAGTTCacactcattatcatgtttcactacaacccaagtccatttcacaccagagttctcctttaacacacTCACTGAGGAAAGACCTGATAGACTCATTAAAAATCAAGGGTAATACAGGTTCCTCTGATATTTTGGCTTTAGGATTAGCTTTAATTTGGTCTAAAACACAGGTTTCAAACCTGAGATCCAGTTCCTAGTCCCAGGCTTTGTGATTCCTTGGTAGGTGTGACAATAAGTGGCCAATCAGTTGCATTATTTAGAACAATATCCAGGATTTACTGTTCAGATTTTTAAATGGGGAACCAGAAGTGGTTTATCTGTGGAAGGGGTGCCCAGTTTTAGTGTAGATGATAGTTTGGTTTGAGAGGATGCATGAAAATCTGCATAATTCAGTGTTTGGGATGCAAACAGTCATACAGAATctgggtttggtgtgaaattgtGGTTCATTATAGAGAAACTATGATTAGGGTTTGATTTctttacagtggtggtgaaaGGAAACCATGGTCACCACAACTGAAGCACGTGTATAGACATTTTATTAACTATCCAAACTAGAGATGcacttaaaatgaaaatatttgccCGAAAGTCAAAAACCGAACCTGGTTTTAAAGCAGGTTTTCATTCgttttgacactttttttttaccactgaatgaactgaaattaaatagtgtacatttatattttgtctGTCATTTTAAACAGCAGACAAATCaacattatacaatatattaaccAGAACATttctattttagtcataaatttacctcagcagtgctattcaagGCTTTTGTAAGGGAATCTAGACAGGAGATCTACACTATGTAAGGGAATCTACCTTCtattggtaaacaaacaaatgctaaggccTGATACAAACACAAAAGTGATGCCGAgcactttattttgtttaatttgtttaagtagagtataaaaatgaacttgttgAAAGAAGGCCTGTCAAcgctacttaaaatatattcaaaatatataatgtttctCCCGCTAAACGAAACGCTacaatatgacttaaaataaacatttttatgtacATGCATAGCACACgtagaattattttattaacttcGCAAATAGAgatgcactgaaataaaaatattggctGAAAGTCGTATACCGAACCTGGTTTTAAGgcaggttttcattcattttgacaCTTTTTAACCACTAAATGGATAAAATCGAATAGTATAAATTTATTTTGTCTGATATTTTAAAGAATCacagcagacaaaccaacaacATACAATAGATTTAATTGAACATTTCTATTctagtcatgaatttacctcagcagtgctacttaaGGCCTATGTAAGGGAATCTACACACTGATTGGCACATCTACACAGGAACACCTGTGTGtgttggtaaacaaacaaatgctatgGCCAATTTAGCTCCGCTAACGTTACTATTCTAGCCCTGTGCAGCTTATAACTTTCAGTTGGAAAACAGAAGTTTGTAAAAGTGTACAAAACTGATACAAAAAacaagtgtaaaaatgaacttaaacatgccGTTTGTCGAGAGAAGGCCTGCCAACGCTACTTAAAATATACTCTGTTTAAAGGAAACGCTGCAATACGActtaaagtaaactttttttggtatgaattatttagtttatCTTATTCCCTTACTGTGCAGTTTTGCCATTTCCTGCTACGTATTTTCAGTTACAACTGTTCGGTGCATCTCTAACCAGAACCCATATAATAGGGAATAATTATGCTTAAATAGTGGAAAATCTGAgtgaaaaaaattcaaaaaaatgatttaagagGTTATCTGCGATACATTTAGGCCACATTATAGTAAAGACACATTTGTCTACCACGTGTTAATGCATGtggtttaaaaccttttaagaatacaatccagatactagtcACACGGCGTTACCAGGTGTAAATGGGTCTAGAACAGAGCTTTTCACACCAAGCCCATTCATTCTCTCGTTTGCATCTTAAGCATTCAATTATGCATCATTTCACAAAAGAAGTTGTGAAATTCCTTTTTTTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219175 lncRNA upstream 21235 30845730 ~ 30846030 (+) True G161775
TU219159 lncRNA upstream 70438 30759344 ~ 30796827 (+) True G161763
TU219150 lncRNA upstream 170542 30695539 ~ 30696723 (+) True G161754
TU219151 lncRNA upstream 177321 30689715 ~ 30689944 (+) True G161755
TU219140 lncRNA upstream 206538 30660320 ~ 30660727 (+) True G161746
TU219186 lncRNA downstream 310 30894816 ~ 30915250 (+) False LOC103039351
XR_002651290.1 lncRNA downstream 338 30894844 ~ 30915250 (+) False LOC103039351
XR_002651289.1 lncRNA downstream 13152 30907658 ~ 30915250 (+) True LOC103039351
TU219183 lncRNA downstream 13172 30907678 ~ 30915250 (+) False LOC103039351
TU219206 lncRNA downstream 133482 31027988 ~ 31035682 (+) True G161797
XM_022679855.1 mRNA upstream 67041 30798138 ~ 30800224 (+) True LOC111194808
XM_022679851.1 mRNA upstream 194996 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA upstream 194996 30661882 ~ 30672269 (+) False LOC111194807
XM_022679853.1 mRNA upstream 194996 30666563 ~ 30672269 (+) False LOC111194807
XM_022679856.1 mRNA upstream 425389 30431447 ~ 30441876 (+) True lysmd2
XM_015602154.2 mRNA downstream 76666 30971172 ~ 30983860 (+) True LOC103039032
XM_022679862.1 mRNA downstream 269532 31164038 ~ 31255308 (+) True slc9a1
XM_022679863.1 mRNA downstream 486711 31381217 ~ 31514641 (+) True znf385d
XM_022679864.1 mRNA downstream 486711 31381217 ~ 31514641 (+) False znf385d
XM_022679865.1 mRNA downstream 486711 31381217 ~ 31514641 (+) False znf385d
TU218604 other upstream 1750470 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2108258 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 2242480 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3750054 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3959638 26905244 ~ 26907627 (+) True G160919
TU219503 other downstream 1174356 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1341810 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1819677 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5859679 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 6515486 37409992 ~ 37411969 (+) True G163105

Expression Profile