RNA id: XM_007236248.3


Basic Information

Item Value
RNA id XM_007236248.3
length 1001
RNA type mRNA
GC content 0.36
exon number 6
gene id hmgn2
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30875038 ~ 30878327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGGTTTCTATcttatatttcaatataaaaactaaataaacattgGGCCGTTATTGTATTGAAGCTTTGTGTGGAGAGCAGCGCGGTGCAGAGCCTTGCCGAGGAAAAACAACAAACCTacatttccctctttttttacaCGGTTTTTCAAGCGCCAAGATGCCCAAAAGAAAGGCTGACGGAGAGAAGGCTGCCAAAGGCAAGGAGGAGccaaCTAGACGCTCCGCAAGGCTGTCTGCTagACCAGCCCCTCCTAAACCCGCCCCAAAGCCGAAAAAAGCTGCCCCCAAGAAGGCAGCCAAAGGGAAGAAGGCCAACCCTGCTGAAAATGGAGAGGCCAAGGCAGACCAGGCGCAAAAGGTTGAAGCTGCAGCAGACGCCAAATGAGAAGCGATTGAATTGTTTAATTCTTCTGTGTACTTGGTGACTGTACAGTTTGAAATAACTATTTTTTACcaagttttatattaagaataTCGTTTATAGTTTAATTGTTGTTTGCTTTCATATCCATTTATGCCCCATCATTAATGAAGCCGCCCACCTTGCCAAAATGGCTGAATTGGTTTTTACACCCATGAATGTTTtggtattttattacattttgggtttttaaaatatattttaaacaccaAACATTCTCATAAGGCAGCtatagtgtgtttttaaaatggtATGGGAAAgagttttttccatttttttttcttttttaattttcattttccttttttatttgtgtacttaacaatactgtattttactttttttcattatgttcttattaacacagttaaaaacaaaatgactaaattgtgaGTAGGAAAAtcaaccatgattaattaaatttgcAGGATGAAATTAACGAGTTTCttcaaactgttaaaatgtcgtTTTTATTAAGTTATACGCTCCAATATTGGAAGGATGTTTTGTGACTCCTAAAATTACTTGTTCTGAATggttttgaataaaataaaaatttcaaAAGAATATCCCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219172 lncRNA upstream 3131 30867265 ~ 30871934 (+) True dhdds
TU219175 lncRNA upstream 29035 30845730 ~ 30846030 (+) True G161775
TU219159 lncRNA upstream 78238 30759344 ~ 30796827 (+) True G161763
TU219150 lncRNA upstream 178342 30695539 ~ 30696723 (+) True G161754
TU219151 lncRNA upstream 185121 30689715 ~ 30689944 (+) True G161755
TU219181 lncRNA downstream 12006 30890333 ~ 30915250 (+) False LOC103039351
TU219185 lncRNA downstream 12006 30890333 ~ 30915250 (+) False LOC103039351
XR_002651291.1 lncRNA downstream 12106 30890433 ~ 30915250 (+) False LOC103039351
XR_001518340.2 lncRNA downstream 13870 30892197 ~ 30915250 (+) False LOC103039351
TU219186 lncRNA downstream 16489 30894816 ~ 30915250 (+) False LOC103039351
XM_015602150.2 mRNA upstream 7577 30854558 ~ 30867488 (+) False dhdds
XM_007236249.3 mRNA upstream 7577 30854561 ~ 30867488 (+) False dhdds
XM_022679855.1 mRNA upstream 74841 30798138 ~ 30800224 (+) True LOC111194808
XM_022679851.1 mRNA upstream 202796 30661882 ~ 30672269 (+) True LOC111194807
XM_022679852.1 mRNA upstream 202796 30661882 ~ 30672269 (+) False LOC111194807
XM_015602154.2 mRNA downstream 92845 30971172 ~ 30983860 (+) True LOC103039032
XM_022679862.1 mRNA downstream 285711 31164038 ~ 31255308 (+) True slc9a1
XM_022679863.1 mRNA downstream 502890 31381217 ~ 31514641 (+) True znf385d
XM_022679864.1 mRNA downstream 502890 31381217 ~ 31514641 (+) False znf385d
XM_022679865.1 mRNA downstream 502890 31381217 ~ 31514641 (+) False znf385d
TU218604 other upstream 1758270 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2116058 28745696 ~ 28759007 (+) False fam219b
TU218548 other upstream 2250280 28622128 ~ 28624785 (+) True G161292
XR_002651269.1 other upstream 3757854 27109671 ~ 27117211 (+) False ccnl1
TU218064 other upstream 3967438 26905244 ~ 26907627 (+) True G160919
TU219503 other downstream 1190535 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1357989 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1835856 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5875858 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 6531665 37409992 ~ 37411969 (+) True G163105

Expression Profile