RNA id: XR_001518340.2


Basic Information

Item Value
RNA id XR_001518340.2
length 1510
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC103039351
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 30890333 ~ 30915250 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTCCTATATAACCCACCTCCTGCACAGCGCGCGCTCTCAGCCCCCTCCTCGCGCCGGACAGCAACTCATCTTTATCCAGGTCCATCCGTGGCCGTTAGCTGTTGGTTCGCTCCAGTGTCCTACTCTCAAATCTGCAAATATGATCATTAGACTGGGACGCTTGACTCCTGGATACTTCCGCCTCCTGCAgAGGCAGGTGTCCGGCGAGATCCAGACGCAGCCTCAGGACCGAGCCTTGAACCAGATCGCCATGATGCTGGCCATCATGGGCCTCAGTCTGTCCTACTACAGCGCCAAGCAGATGACGGAGAAAGTCCAGCGCGTTCCTGGACACTGAAGATTCCCTGAACTCCGGTCTGAATGAATCCCGGAGATGATGAAACCAAACAAAGCCAAATGGGAGATTAAGATTGGAGAGATTGGAGAGATTGGAGAGATTGGGGAGAAAGAGACCGAGATACTGAGATCAAAGACTTTGTCCAGCACTTTCCTTACACTAACTCAcgatcaccagcaccgtaagcCTGAGTCACTGGATTAACACTTCACGTTCACCATGAGCCACCAAGAGTTCAGGGCTGCTGTTGAGGCGATCCTAATGATTGCAGATTGCAGATCGCAGCTTTAGCGTAGCCGGGAATTGGAGAACAAATGAACGACTGTCCAAGATGGCGTTTCATAGAGATAGGGGGCAGGTTTTATAgtcagaagaaaaagaaagaaagtctaATCTGTTGAGGCCTGGATGtcggtggttgctgtggtatacacTCCTCCAAAAAGTTTATTTTGAAACACCCTAtggttctgtgtgtttttctgtaagACCTTTTGGGATAATAACGTTTTTAAAGGGAATAATCTATTAGCATAAGAACCCATGCTTTTTAaaggaatataataataaatattattattactatttgaatactgtgttttaatgtattaaacaaGTATCGACCACAGACCAGGAGCTTTCTGTACCACGTAACCCATCGACAGCAGGTTAAATATTCACGAATGGTCATAAAAGGCATGTGAAAAGTTTGTTCTTTAAGGCGGTATAGATGCAGATGAGGTGCCACAGCGAACTCTGAGAACTCTGTACACTGTAAGACCAGTAAAAACGAAATATCTATCTGTTCGGTGTTTGATGCTGTTAACACTTTCACTATACTATCCAGAGCAATGCAAACTATAAAGTAGCctgtaaatcactttttttggaACAAATCAACGCGTTTAAGGGACTTTTATTCTTTCCTACTTTATCGGaactccttttttcttttgtattcctcacattttgtgtgttttcgTTAAAACTGTGTAAACTACCTAGTTAAGTGTTGACTGTGACTTTTCTAATCTGTTTGAATGCATGAGTGTGAAACTTTTGAACGATGTGAAACTGTATTATTGTTACTAATGAATTTTATTGTGATGAATGtatattgctatttttaaataaatgaacgaATAAAAgctgtgaaattaaacaaaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219172 lncRNA upstream 20263 30867265 ~ 30871934 (+) True dhdds
TU219175 lncRNA upstream 46167 30845730 ~ 30846030 (+) True G161775
TU219159 lncRNA upstream 95370 30759344 ~ 30796827 (+) True G161763
TU219150 lncRNA upstream 195474 30695539 ~ 30696723 (+) True G161754
TU219151 lncRNA upstream 202253 30689715 ~ 30689944 (+) True G161755
TU219206 lncRNA downstream 112738 31027988 ~ 31035682 (+) True G161797
TU219217 lncRNA downstream 184318 31099568 ~ 31190249 (+) True G161808
TU219228 lncRNA downstream 277031 31192281 ~ 31199747 (+) True G161816
TU219231 lncRNA downstream 304088 31219338 ~ 31220183 (+) True G161818
TU219239 lncRNA downstream 330831 31246081 ~ 31246877 (+) True G161826
XM_007236248.3 mRNA upstream 13870 30875065 ~ 30878327 (+) False hmgn2
XM_015602150.2 mRNA upstream 24709 30854558 ~ 30867488 (+) False dhdds
XM_007236249.3 mRNA upstream 24709 30854561 ~ 30867488 (+) False dhdds
XM_022679855.1 mRNA upstream 91973 30798138 ~ 30800224 (+) True LOC111194808
XM_022679853.1 mRNA upstream 219928 30666563 ~ 30672269 (+) False LOC111194807
XM_015602154.2 mRNA downstream 55922 30971172 ~ 30983860 (+) True LOC103039032
XM_022679862.1 mRNA downstream 248788 31164038 ~ 31255308 (+) True slc9a1
XM_022679863.1 mRNA downstream 465967 31381217 ~ 31514641 (+) True znf385d
XM_022679864.1 mRNA downstream 465967 31381217 ~ 31514641 (+) False znf385d
XM_022679865.1 mRNA downstream 465967 31381217 ~ 31514641 (+) False znf385d
XR_002651288.1 other upstream 13870 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 13885 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 13885 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 1775402 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2133190 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 1153612 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 1321066 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1798933 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5838935 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 6494742 37409992 ~ 37411969 (+) True G163105

Expression Profile