RNA id: TU219244


Basic Information

Item Value
RNA id TU219244
length 273
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G161831
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31311531 ~ 31311803 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcgagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatgtctgtcatctgctggtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219239 lncRNA upstream 64654 31246081 ~ 31246877 (+) True G161826
TU219231 lncRNA upstream 91348 31219338 ~ 31220183 (+) True G161818
TU219228 lncRNA upstream 111784 31192281 ~ 31199747 (+) True G161816
TU219217 lncRNA upstream 121282 31099568 ~ 31190249 (+) True G161808
TU219206 lncRNA upstream 275849 31027988 ~ 31035682 (+) True G161797
TU219251 lncRNA downstream 61174 31372977 ~ 31528197 (+) True G161834
TU219255 lncRNA downstream 63659 31375462 ~ 31518161 (+) True G161835
TU219254 lncRNA downstream 137934 31449737 ~ 31518161 (+) False G161835
TU219267 lncRNA downstream 243626 31555429 ~ 31559544 (+) True G161847
TU219272 lncRNA downstream 259291 31571094 ~ 31573854 (+) True G161849
XM_022679862.1 mRNA upstream 56223 31164038 ~ 31255308 (+) True slc9a1
XM_015602154.2 mRNA upstream 327671 30971172 ~ 30983860 (+) True LOC103039032
XM_007236248.3 mRNA upstream 433204 30875065 ~ 30878327 (+) False hmgn2
XM_015602150.2 mRNA upstream 444043 30854558 ~ 30867488 (+) False dhdds
XM_007236249.3 mRNA upstream 444043 30854561 ~ 30867488 (+) False dhdds
XM_022679863.1 mRNA downstream 69414 31381217 ~ 31514641 (+) True znf385d
XM_022679864.1 mRNA downstream 69414 31381217 ~ 31514641 (+) False znf385d
XM_022679865.1 mRNA downstream 69414 31381217 ~ 31514641 (+) False znf385d
XM_022679866.1 mRNA downstream 272943 31584746 ~ 31605490 (+) True efhb
XM_015601104.2 mRNA downstream 376249 31688052 ~ 31802563 (+) False satb1
XR_002651288.1 other upstream 433204 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 433219 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 433219 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 2194736 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2552524 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 757059 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 924513 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1402380 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5442382 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 6098189 37409992 ~ 37411969 (+) True G163105

Expression Profile