RNA id: TU219254


Basic Information

Item Value
RNA id TU219254
length 191
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G161835
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31375462 ~ 31518161 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaaccCCTCCCCCTGAGTCTACCCCTGCAGAACTCTACACAGGTCACCTGGATGACGAAGCTTGTCTCTCTCATCTagcaatgtgaaaaaaatgaaaagatgaaaattaaaagatgaacaattttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219244 lncRNA upstream 137934 31311531 ~ 31311803 (+) True G161831
TU219239 lncRNA upstream 202860 31246081 ~ 31246877 (+) True G161826
TU219231 lncRNA upstream 229554 31219338 ~ 31220183 (+) True G161818
TU219228 lncRNA upstream 249990 31192281 ~ 31199747 (+) True G161816
TU219217 lncRNA upstream 259488 31099568 ~ 31190249 (+) True G161808
TU219267 lncRNA downstream 37268 31555429 ~ 31559544 (+) True G161847
TU219272 lncRNA downstream 52933 31571094 ~ 31573854 (+) True G161849
TU219274 lncRNA downstream 84846 31603007 ~ 31605486 (+) False efhb
TU219485 lncRNA downstream 318065 31836226 ~ 31836672 (+) True G162001
TU219487 lncRNA downstream 353862 31872023 ~ 31872277 (+) True G162003
XM_022679862.1 mRNA upstream 194429 31164038 ~ 31255308 (+) True slc9a1
XM_015602154.2 mRNA upstream 465877 30971172 ~ 30983860 (+) True LOC103039032
XM_007236248.3 mRNA upstream 571410 30875065 ~ 30878327 (+) False hmgn2
XM_015602150.2 mRNA upstream 582249 30854558 ~ 30867488 (+) False dhdds
XM_022679866.1 mRNA downstream 66585 31584746 ~ 31605490 (+) True efhb
XM_015601104.2 mRNA downstream 169891 31688052 ~ 31802563 (+) False satb1
XM_022679867.1 mRNA downstream 176305 31694466 ~ 31802563 (+) False satb1
XM_015601103.2 mRNA downstream 189980 31708141 ~ 31802563 (+) True satb1
XM_022679868.1 mRNA downstream 196751 31714912 ~ 31802563 (+) False satb1
XR_002651288.1 other upstream 571410 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 571425 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 571425 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 2332942 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2690730 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 550701 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 718155 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1196022 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5236024 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5891831 37409992 ~ 37411969 (+) True G163105

Expression Profile