RNA id: TU219272


Basic Information

Item Value
RNA id TU219272
length 276
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G161849
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31571094 ~ 31573854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGAAAGTCCAGTGCTCTCTTGTTTGCGAGGTCCGCCTTGTTCCCAGCCAAAGCTATTACGATATTGGGACTGGCTTGCCTCTGAAGCTCCTTCACCCAATTCTTTGCACGTGCAAACGATTCTTCGTTCGTGATGTCATACACCACTATGGCGGCCTGCGCTCCTCTGTAATACATGGGAGCCAAACTGTGGTAGCGTTCCTGACCAGCTGTGTCCCAGATCTCGAACTTCACTGTCGTGTCGTCCAAACATACTGTCTGAGTCAGGAATGCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219267 lncRNA upstream 11550 31555429 ~ 31559544 (+) True G161847
TU219251 lncRNA upstream 42897 31372977 ~ 31528197 (+) True G161834
TU219255 lncRNA upstream 52933 31375462 ~ 31518161 (+) True G161835
TU219254 lncRNA upstream 52933 31449737 ~ 31518161 (+) False G161835
TU219244 lncRNA upstream 259291 31311531 ~ 31311803 (+) True G161831
TU219274 lncRNA downstream 29153 31603007 ~ 31605486 (+) False efhb
TU219485 lncRNA downstream 262372 31836226 ~ 31836672 (+) True G162001
TU219487 lncRNA downstream 298169 31872023 ~ 31872277 (+) True G162003
TU219499 lncRNA downstream 514489 32088343 ~ 32091024 (+) True G162014
TU219512 lncRNA downstream 620845 32194699 ~ 32194986 (+) True G162025
XM_022679863.1 mRNA upstream 56453 31381217 ~ 31514641 (+) True znf385d
XM_022679864.1 mRNA upstream 56453 31381217 ~ 31514641 (+) False znf385d
XM_022679865.1 mRNA upstream 56453 31381217 ~ 31514641 (+) False znf385d
XM_022679862.1 mRNA upstream 315786 31164038 ~ 31255308 (+) True slc9a1
XM_015602154.2 mRNA upstream 587234 30971172 ~ 30983860 (+) True LOC103039032
XM_022679866.1 mRNA downstream 10892 31584746 ~ 31605490 (+) True efhb
XM_015601104.2 mRNA downstream 114198 31688052 ~ 31802563 (+) False satb1
XM_022679867.1 mRNA downstream 120612 31694466 ~ 31802563 (+) False satb1
XM_015601103.2 mRNA downstream 134287 31708141 ~ 31802563 (+) True satb1
XM_022679868.1 mRNA downstream 141058 31714912 ~ 31802563 (+) False satb1
XR_002651288.1 other upstream 692767 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 692782 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 692782 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 2454299 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 2812087 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 495008 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 662462 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 1140329 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 5180331 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5836138 37409992 ~ 37411969 (+) True G163105

Expression Profile