RNA id: TU219485


Basic Information

Item Value
RNA id TU219485
length 292
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G162001
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31836226 ~ 31836672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcagagagggtgcgcatttctagtgcagaaaaacgggccaaagagtctaaaagcagagagggtgcgcatttctagcacagaaaaacggggcaaagagtctaaaagcggagagggtgcgcatttctagtgcagaaaaacgggcgtaaagagtctaaaagcggagagagtgtgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagagtgtgcatttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219274 lncRNA upstream 230740 31603007 ~ 31605486 (+) False efhb
TU219272 lncRNA upstream 262372 31571094 ~ 31573854 (+) True G161849
TU219267 lncRNA upstream 276682 31555429 ~ 31559544 (+) True G161847
TU219251 lncRNA upstream 308029 31372977 ~ 31528197 (+) True G161834
TU219487 lncRNA downstream 35351 31872023 ~ 31872277 (+) True G162003
TU219499 lncRNA downstream 251671 32088343 ~ 32091024 (+) True G162014
TU219512 lncRNA downstream 358027 32194699 ~ 32194986 (+) True G162025
TU219515 lncRNA downstream 388332 32225004 ~ 32225495 (+) True G162028
TU219516 lncRNA downstream 388332 32225004 ~ 32225495 (+) False G162028
XM_015601104.2 mRNA upstream 33663 31688052 ~ 31802563 (+) False satb1
XM_022679867.1 mRNA upstream 33663 31694466 ~ 31802563 (+) False satb1
XM_015601103.2 mRNA upstream 33663 31708141 ~ 31802563 (+) True satb1
XM_022679868.1 mRNA upstream 33663 31714912 ~ 31802563 (+) False satb1
XM_022679869.1 mRNA upstream 33663 31714912 ~ 31802563 (+) False satb1
XM_022679876.1 mRNA downstream 540429 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA downstream 540429 32377101 ~ 32565890 (+) False LOC107196951
XM_007233723.3 mRNA downstream 845070 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 884572 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 945402 32782074 ~ 32879256 (+) True LOC103040053
XR_002651288.1 other upstream 957899 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 957914 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 957914 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 2719431 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 3077219 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 232190 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 399644 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 877511 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4917513 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5573320 37409992 ~ 37411969 (+) True G163105

Expression Profile