RNA id: TU219487


Basic Information

Item Value
RNA id TU219487
length 255
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G162003
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 31872023 ~ 31872277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacaatttaaagacaggacagtgcagtaccgatacggtataataaagtgtatagtggggataaggtgcagagatgtgtgacatactgtaacatatagaacatatataatcacagcagttactgaggtagagtttatagtttttaagagtgcagcaaatattgctgaagggaataaagtcatgtcagcctctgtgtgctgactgggtgtgtgtgtgtgggtgaagttcagttctttgtgtgtgtaaaggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219485 lncRNA upstream 35351 31836226 ~ 31836672 (+) True G162001
TU219274 lncRNA upstream 266537 31603007 ~ 31605486 (+) False efhb
TU219272 lncRNA upstream 298169 31571094 ~ 31573854 (+) True G161849
TU219267 lncRNA upstream 312479 31555429 ~ 31559544 (+) True G161847
TU219255 lncRNA upstream 353862 31375462 ~ 31518161 (+) True G161835
TU219499 lncRNA downstream 216066 32088343 ~ 32091024 (+) True G162014
TU219512 lncRNA downstream 322422 32194699 ~ 32194986 (+) True G162025
TU219515 lncRNA downstream 352727 32225004 ~ 32225495 (+) True G162028
TU219516 lncRNA downstream 352727 32225004 ~ 32225495 (+) False G162028
TU219526 lncRNA downstream 450607 32322884 ~ 32368130 (+) True G162036
XM_022679869.1 mRNA upstream 69460 31714912 ~ 31802563 (+) False satb1
XM_022679876.1 mRNA downstream 504824 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA downstream 504824 32377101 ~ 32565890 (+) False LOC107196951
XM_007233723.3 mRNA downstream 809465 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 848967 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 909797 32782074 ~ 32879256 (+) True LOC103040053
XR_002651288.1 other upstream 993696 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 993711 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 993711 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 2755228 29070820 ~ 29116795 (+) True G161331
XR_002651275.1 other upstream 3113016 28745696 ~ 28759007 (+) False fam219b
TU219503 other downstream 196585 32068862 ~ 32148190 (+) True G162017
TU219521 other downstream 364039 32236316 ~ 32295029 (+) True G162032
TU219593 other downstream 841906 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4881908 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5537715 37409992 ~ 37411969 (+) True G163105

Expression Profile