RNA id: TU219521


Basic Information

Item Value
RNA id TU219521
length 421
RNA type TUCP
GC content 0.44
exon number 2
gene id G162032
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32236316 ~ 32295029 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagctgctttgtgcagtggtcagactctaccatcatcaatgctgctgcaagatcttggtgaaaaattaattaattaatgcaacaCTGGATTAAACCTGAAAACACTGCTACTCCGGCAGCACTTTCAAATAATTATTCCTTTACCCATACTTCTCGTCTCtcaggacgaggaggtggaacTGGCCTATTGCTCGCGAATGGCTTAAAATACACTCCACTATTACCTGCAAACTCATACAACTCGTTCgagtatcatgccacactggttaatactccaTCAAAACTTACTGTCGTTGTCATCTaccgtcctcctggacaaatgggcgaGTTCACACATgaacttgacatgctactgtcttctatccccGAGCAAGATTGCcccatgctcattctaggggatatgaacatccaTCATGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219515 lncRNA upstream 10821 32225004 ~ 32225495 (+) True G162028
TU219516 lncRNA upstream 10821 32225004 ~ 32225495 (+) False G162028
TU219512 lncRNA upstream 41330 32194699 ~ 32194986 (+) True G162025
TU219499 lncRNA upstream 145292 32088343 ~ 32091024 (+) True G162014
TU219487 lncRNA upstream 364039 31872023 ~ 31872277 (+) True G162003
TU219526 lncRNA downstream 27855 32322884 ~ 32368130 (+) True G162036
TU219542 lncRNA downstream 35160 32330189 ~ 32333504 (+) True G162052
TU219545 lncRNA downstream 39478 32334507 ~ 32335028 (+) True G162054
TU219534 lncRNA downstream 275523 32570552 ~ 32576305 (+) True G162044
TU219533 lncRNA downstream 282241 32577270 ~ 32579768 (+) True G162043
XM_022679869.1 mRNA upstream 433753 31714912 ~ 31802563 (+) False satb1
XM_022679876.1 mRNA downstream 82072 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA downstream 82072 32377101 ~ 32565890 (+) False LOC107196951
XM_007233723.3 mRNA downstream 386713 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 426215 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 487045 32782074 ~ 32879256 (+) True LOC103040053
TU219503 other upstream 88126 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1357989 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 1358004 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 1358004 30875118 ~ 30878312 (+) False hmgn2
TU218604 other upstream 3119521 29070820 ~ 29116795 (+) True G161331
TU219593 other downstream 419154 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4459156 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5114963 37409992 ~ 37411969 (+) True G163105

Expression Profile