RNA id: TU219526


Basic Information

Item Value
RNA id TU219526
length 382
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G162036
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32322884 ~ 32368130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attttagtttttaatgtgCTGTCTTTATTAATAACTTCAAAAATAAGTAGCAAATGAAACCaacagtaagaaaaaaagaagaatatacagtacatgtggGTACAAGCCTTTTCATTCAGCCTGTTTATTCATGCTGTTGAATTGTTATACAGCAGAGACGTCTGCTGGTGATCTGCTGCATTACAACACGTCACTGTACCCTAGATCCATAGTGATAACCTGGCCTGCTTCATTCAGAGAGTGAACAGAATGTTCCTGTATATAATTACATTGCACCTTTTCCCAACCTATACCCCTGAGTATATGTGTGTGGCATCCTTGCTTGGGGGGAAATCCTGATAAAATGGCCGAattttctccccaatttacacggccaattacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219515 lncRNA upstream 97389 32225004 ~ 32225495 (+) True G162028
TU219516 lncRNA upstream 97389 32225004 ~ 32225495 (+) False G162028
TU219512 lncRNA upstream 127898 32194699 ~ 32194986 (+) True G162025
TU219499 lncRNA upstream 231860 32088343 ~ 32091024 (+) True G162014
TU219487 lncRNA upstream 450607 31872023 ~ 31872277 (+) True G162003
TU219534 lncRNA downstream 202422 32570552 ~ 32576305 (+) True G162044
TU219533 lncRNA downstream 209140 32577270 ~ 32579768 (+) True G162043
TU219536 lncRNA downstream 245588 32613718 ~ 32615469 (+) True G162046
TU219582 lncRNA downstream 265841 32633971 ~ 32635489 (+) True G162087
TU219594 lncRNA downstream 280029 32648159 ~ 32747711 (+) True G162097
XM_022679869.1 mRNA upstream 520321 31714912 ~ 31802563 (+) False satb1
XM_022679876.1 mRNA downstream 8971 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA downstream 8971 32377101 ~ 32565890 (+) False LOC107196951
XM_007233723.3 mRNA downstream 313612 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 353114 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 413944 32782074 ~ 32879256 (+) True LOC103040053
TU219521 other upstream 27855 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 174694 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1444557 30875038 ~ 30878327 (+) True hmgn2
TU219178 other upstream 1444572 30875118 ~ 30878312 (+) False hmgn2
TU219179 other upstream 1444572 30875118 ~ 30878312 (+) False hmgn2
TU219593 other downstream 346053 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4386055 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5041862 37409992 ~ 37411969 (+) True G163105

Expression Profile