RNA id: TU219536


Basic Information

Item Value
RNA id TU219536
length 1668
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G162046
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32613718 ~ 32615469 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAAAGcgaaagagagtgtgagtgagaaagCAAGAGACAGATCGAGCGAGGGAGACGAGTGTGAgccagagcaagagagagagtgtaagccAGACAAGAGACAGATGGGGAGAAAGACTCTTATCAATATTAATAGGAAAAGAGCTCTTGTATCAGAATTTGTATCAGTATCAACAGTTGCACGTGGGGAAAAAAACCTGTGGTTCGGCCCGTGAATAACTTTGATGTGCACAACGCTCACAATGTATAAAAGAATCCAGAGACACATACATTTGTCCAGTCAGCATAAGTGTATTTGCACTCAAGTAAAACCAAACTAAATGTACATTTCAAATGGTCTAACAgcctaaatatataaatagagcAGTAACGGAATGTTGCATCTGCGCAGCTAGCATGGGTCACGAGAAACGGGTGATGTTCTTTACACTGgggaaagaaaattaaaaagacCATTGGTACAAAAGAAAGCAGAGGAAGGAAAAGAAGAACTAGAACCATGTTGCGCTGAGATCTGATCTTAGATTATATTTACAGTAGAGAGATAAAAGTTTGAGCCGTTGCTTTTCATGCGCTAGCTCGGATTCCTCTTCCAATAAACTTCCAAACTGACTAACAAAAGCCCACAACTAACAACTTCAGACTAGTATACAGGATAACATAGTTTTTACTGACATTTCCCAACTCTTTAAAAGCATTACGCCATTTGTAAATTCCAATCCCTGCTAATTATGAACAACTGGAAGGAAGTGGTGACTCGGTTAGCATTATGCAAATGAATCTAATTGGTCTACCGCAATGAGAACTTTGGCTCTGGGCCCATTGTTTGGGAGGTCCAAACCACATTCATATTTGATTAAGAAGTAAAAATCGACTAATcaactaaacacatacacacaaaacagattggaTCCATTTTATAAGAGACAATCGATCACGGCAGTATCTACAGTGCATCAGCTAACTAGAACTTTCAGAACCATTTAATAGTTGTTTTAATAACAGCGATTTCTCCCTTTGGCTAGTCATCACACACTGAAACAGAGCTGGTCCTGAATTTTCTGATGTTTTGTAAACTTTTGCTTGCTAGTTCAGTTGTAAAGTGCATGTTCCCTCTGCACTGCATCTTAAGAAGCACCATTTACAGAAAGAAGCGTCTGGATCAGACACATttctaccaaaaaataaaaaaaatcaacgttttttgtgatttttttcccaTGCGCCAACATAACATTAGAAAGCCCAATGACTGTGTGCAAGTGTATAGTTGCTGAATTCtgcttttaaatgataaatggaCGATTTGGAGGGAATTCGATTCTCAAGGGGTTCTGGGgtaaatttttcttttattgggggtcctctgtgattttattcctgtccggaatgaccatgtatatgtttttcttagacGTTCTCTGAGGGAAAATTATAGgttgaattatctactgttttttgctgaactctgtggtcctctggtGATTTTAGTGCCATCTGGACAatcatctctgagtttcatcacctcgcatttaataattcactgccaagcactgtaattacacattgGGTGCgagtttccatggagatccatgtaaacacaacagggaGTGgacatggaggagctactgaacgtgatgtcatgtgactgagaaagccaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219533 lncRNA upstream 33950 32577270 ~ 32579768 (+) True G162043
TU219534 lncRNA upstream 37413 32570552 ~ 32576305 (+) True G162044
TU219526 lncRNA upstream 245588 32322884 ~ 32368130 (+) True G162036
TU219545 lncRNA upstream 278690 32334507 ~ 32335028 (+) True G162054
TU219542 lncRNA upstream 280214 32330189 ~ 32333504 (+) True G162052
TU219582 lncRNA downstream 18502 32633971 ~ 32635489 (+) True G162087
TU219594 lncRNA downstream 32690 32648159 ~ 32747711 (+) True G162097
TU219596 lncRNA downstream 36557 32652026 ~ 32654735 (+) True G162099
TU219598 lncRNA downstream 36557 32652026 ~ 32655165 (+) False G162099
TU219606 lncRNA downstream 62882 32678351 ~ 32687544 (+) True G162107
XM_022679876.1 mRNA upstream 47828 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA upstream 47828 32377101 ~ 32565890 (+) False LOC107196951
XM_022679873.1 mRNA upstream 811155 31714912 ~ 31802563 (+) False satb1
XM_007233723.3 mRNA downstream 66273 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 105775 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 166605 32782074 ~ 32879256 (+) True LOC103040053
XM_022679879.1 mRNA downstream 290185 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA downstream 290185 32905654 ~ 32915649 (+) False LOC103039334
TU219521 other upstream 318689 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 465528 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1735391 30875038 ~ 30878327 (+) True hmgn2
TU219593 other downstream 98714 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4138716 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 4794523 37409992 ~ 37411969 (+) True G163105

Expression Profile