RNA id: TU219542


Basic Information

Item Value
RNA id TU219542
length 2355
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G162052
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32330189 ~ 32333504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGGTGTAGTGCCCAATGGGTTGGGTGTTGGCGGATCCTGTAGGGTACACGTAGTTGGCGACTTCATTGTGCCATGCTGTCACGACGCTGGTCCACTTCACCATTCCAGTGCTTTTAAACAGGTTCTCGCCCATCTGATTTCCGAGCATGCGGGTGCTGGGATCTCCATGAACCATAGAGCAGGTGTTGGCCCAGTTCTGAGCTGAGACTGCTGCTTCCCGGCTCCAGTTCTGCAGGCAAATAGCACACATCATAAGAAATGTATAAACTGTAACATACAACATAAATACGTATTACGTTTAAAGCTTGTAAACAAATACTTACGTTTAAACAGGTAGAAACTCAAAGCTAATTCAGGCTAATACGACTtatttgggctaattggcacctgattagtttaaaaacaaaaaaatgtccttttatatgatgtagtttctgagaaaaatgatgTTCACTTACAAAGACATTTTATGTAAGTTTTATGTTTCAATAGAACACAACAATTGTGCCTCTTTGAGCATCACGGCTCATTTGAAGTGCTGTTTCAACACAAATACAGGACAAAACACAGTTAGAAGCTGAAGCTTAGCCACATAGATAAATACCATAATCGTAAATATTTGAAACAACTTTTAGAACTTGACTTACTCAGCTAGATAAGTTTGATAGGGGAAATTTTGGCACCAAATGTTGCTTCTGGAAAGCAGAGTTTGTATTGGTGGGCTACAGTTACATGGTTTACTAGGTGGACTGGAAGAAAAACTGTAGACGCTCCTGTCTCTCGCACACTTAGCTCTACCTGCAATCTCCAGCCTCAGGATTACGTGCACACATCCCTACCAGGAATttaatcaccagaatattgatttcacctgtttaccttcctatatatattaaataacttCTCGTTGAGTATTGAACCTCTTGTACCGCTCTACAAAGCGTTTCCTCATTCCTCATTGTGTTTTCCTATCCGTTACGACCATGTTTTTCCATTTCCCTCAActtttttaaccatatatggtATGTTTATCCTCTCTGGCTGCTGTTTACCGGTATTGACAACCCCTTGTATCATTgctgtatttaataaagtatctgATTGTCATCTGCGCCTATCTGCACCATGACACActagctttagcttttatttaagaATGTTCTGGAGCCGTATCCTCGTTCATTGTTTTCCACAGAGGTACTCAACATAATAAACCTCCAGTCCAATAAGATTGTTGTTGATTTACGTCTTTATAAACACTGTTTCAACCCAGAAACatcgtaataaaaaaaaataatggggAACATTACCACATTTTATTTCCTCAACATAGTTAATAAGTTAATAGCAATGAATAAGTTATCAAACTAAATACAGATCTGCTTGTTTTAAATCCAGATCAAGAACGACACAAAACATACCCAATGCTGGTCAGGAGCTAGTTAACGAGCTAGCCTATCAGCATAGGATATGTTCTTTCTGGATGTCCAGCTGGATTTTTAGCAGTGCCCTGAAGCTCATTGTTGCCACCTTAAGTTGCAAGATATTAATAGGTCAGGGTATTCTCTGGTGAAATTAATACAGttcagtagcagtgctgtatgaccCAGACAAGCGTCTTGGCAATGAccttattactgcagttcttcacctgtcagacctctaattcttctctaattcttcactgctgaaactgagactaggcgttgccatgtgggtcagccagacgtgattcttcctgtatcagttttctccggtttcctctggctttatttttttttttaaaggataacCAAAGATAAccaacttttttggaattaCTGTAAATTTTTATCACAGAAATGTTTGTGATTAATAGGCATTCAATTGTATAGCCATTTAATACCACCAATATAATGACTAtagtaatacattttacaagttACTTTCAAAGAGCAATCatctttttattataaataatgtgCAAAAAATAGAACTGGAATCTTGCAACACTACAcatgttacaccttagcccatatctgtcttgtctttttccatttttttggtctgttctgctcctgtcctctgttctcctgGTTTGATTTTCCTCAACATATGCTCCACTAGGGTTTGTTACCCTGCCTCCTTGTTACcggtcccaggtgttcctcaccctcatcctgtatataagcccctttgttagCATTTCTTGTAGCCCTTCGATTTGTCTGTTCTTGTGTCAGGTTTGTTAGTTATTAAGATCCTAGCGTTATTAttgcttttctatttttgttgtcttagttttgtttgatttgataTTCTTTGTTCTAGTGTTTGATATTTAGATATCCTagtcttgttttttgttgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219515 lncRNA upstream 104694 32225004 ~ 32225495 (+) True G162028
TU219516 lncRNA upstream 104694 32225004 ~ 32225495 (+) False G162028
TU219512 lncRNA upstream 135203 32194699 ~ 32194986 (+) True G162025
TU219499 lncRNA upstream 239165 32088343 ~ 32091024 (+) True G162014
TU219487 lncRNA upstream 457912 31872023 ~ 31872277 (+) True G162003
TU219545 lncRNA downstream 1003 32334507 ~ 32335028 (+) True G162054
TU219534 lncRNA downstream 237048 32570552 ~ 32576305 (+) True G162044
TU219533 lncRNA downstream 243766 32577270 ~ 32579768 (+) True G162043
TU219536 lncRNA downstream 280214 32613718 ~ 32615469 (+) True G162046
TU219582 lncRNA downstream 300467 32633971 ~ 32635489 (+) True G162087
XM_022679869.1 mRNA upstream 527626 31714912 ~ 31802563 (+) False satb1
XM_022679876.1 mRNA downstream 43597 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA downstream 43597 32377101 ~ 32565890 (+) False LOC107196951
XM_007233723.3 mRNA downstream 348238 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 387740 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 448570 32782074 ~ 32879256 (+) True LOC103040053
TU219521 other upstream 35160 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 181999 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1451862 30875038 ~ 30878327 (+) True hmgn2
TU219593 other downstream 380679 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4420681 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5076488 37409992 ~ 37411969 (+) True G163105

Expression Profile