RNA id: TU219545


Basic Information

Item Value
RNA id TU219545
length 497
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G162054
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32334507 ~ 32335028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgaaaatgttttatggggtggtctgaacaaatactgcctgaaaggtccaaattattatgtggaataatagttcattaaaaactatttaatttatgatttttttacttttttccatcaagtaattaaaagtaactatgtaacttttactcaaagtacattttaaattgagtacttttttacttttactcgagtagatttttagatgggtacttttactttttcttgagtagaattttagcaaagtaaaggtacttttacttaattacaatttttcagtacttttttcacCTCTGGACAATATACTACACAAGATTACAGCACTatcacattttatcatttttccaCTTGCTTTAATTGTTTTAGTGGGTTAAAATCTGTGAACAGTGTTTTACCATCTTCAGCATGTTGGTGGCGGATGGAGAGACGCCTCTCCTGAACACATTGTGCAGGTTGACGATCTCGTCCTGGACGCTGGTTACGTCGGTACAGATGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219542 lncRNA upstream 1003 32330189 ~ 32333504 (+) True G162052
TU219515 lncRNA upstream 109012 32225004 ~ 32225495 (+) True G162028
TU219516 lncRNA upstream 109012 32225004 ~ 32225495 (+) False G162028
TU219512 lncRNA upstream 139521 32194699 ~ 32194986 (+) True G162025
TU219499 lncRNA upstream 243483 32088343 ~ 32091024 (+) True G162014
TU219534 lncRNA downstream 235524 32570552 ~ 32576305 (+) True G162044
TU219533 lncRNA downstream 242242 32577270 ~ 32579768 (+) True G162043
TU219536 lncRNA downstream 278690 32613718 ~ 32615469 (+) True G162046
TU219582 lncRNA downstream 298943 32633971 ~ 32635489 (+) True G162087
TU219594 lncRNA downstream 313131 32648159 ~ 32747711 (+) True G162097
XM_022679869.1 mRNA upstream 531944 31714912 ~ 31802563 (+) False satb1
XM_022679876.1 mRNA downstream 42073 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA downstream 42073 32377101 ~ 32565890 (+) False LOC107196951
XM_007233723.3 mRNA downstream 346714 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 386216 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 447046 32782074 ~ 32879256 (+) True LOC103040053
TU219521 other upstream 39478 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 186317 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1456180 30875038 ~ 30878327 (+) True hmgn2
TU219593 other downstream 379155 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4419157 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 5074964 37409992 ~ 37411969 (+) True G163105

Expression Profile