RNA id: TU219596


Basic Information

Item Value
RNA id TU219596
length 2664
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G162099
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32652026 ~ 32655165 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATAATAAACGGTAATGCTTGATGTAATACATTTCTGCATTATTAGATCACCATCATTCTTTATATACTCTCACCACTGTGAAAAATTCTGCAAGTTTTTCTAGATTTAGACATTTAGACATTTATAAAGAATCAAAATGGTTGGTGGAAATCAGTTGGTGGATTTATcctttttaaaacagataaaactgGTCAGATTCTCAACATTACCTCTGTAAGATGTACCAGCTGCACTGTGTTCACTGACTGTACTGTCCATGATTTTTGTGAAAGgaattaacagaaaaaaatgatggtAACACTTACTATTAATCCTGTATACATAATGCAGTATTAATGCATCTAAAATGCATATATTATTACCTTATAAAAGCAATCAAaagcctgtataataaataaaaaaaaaactattgcagTGATTAAAggattcataggaagtgttaccaaagcaATGGTAAGCGAAAAGTAAGCGAAAGCCCGAACAGCATTACCAAACTGCTATAGCGCTTATTGCAAATGTTCTATGTTTGTGATATTTACACCTAATTTAAAAATCCTAGCATTTTCAAGActttaaaacatgaaacataaaACCAGAATGAAATACAGACTCATACAGTTccacagagaaaaaataaaaaataaaacacaagaccaacaacaaacaaatccatgagttttaaattacttaaatcaCTGAGACGCcgaataaaatcatttaaatagtttACTGATGAAAATGTTGCATCCATGATATCTAATTGAAGGTGCATTAGAGTACAGTACTAGAGACACTTCAAACTAGATTCAAAAACATTTCCACCCACTGAAATCATACAGAACACTTCACACTTCTTTTATCCTTAAATTCAGTttctatatataaaactatCCTTTCTAAAGAATCATTAAAAATAGTTCTATTCTAAATCTAAATACTGGGCTGTCTTAAAGCTGAATTATAGGGTAATTCATATTTTTTGCTCCTAGACTCCACCTACAGTCAGGAAGTGTATTCTGTGCTTTGAGCCACACTTAAAGAAAGATGCACTACAATGCattacatgcatttctggacaagctgagaaatacagGATAAAATATGTCTCCGTTTATGCAGCACTACCAAGTTCTTAAGTCCTGTCCACTTccccaaagttacatagtgcagtcagcagtctgcctgacattacaacTGACgtgttaaagtaaaaaaaaatatataaaaattaaaatttaagaatttatatttatatgtattattgtaATATCATGGCGCAAATTTACCTGTACTAGCCTTTGGAAAGTACTCTATCTATATTCATGCAttcacatatcccacaggtcactgAAGTATTCAACTTCTATGGGACTtgaaaaaagtcatgggacaccataccatttcctgtcccatgacttttggcaggTCAGTGTATTTTAGCCCAATGTTAATGTGTGTATACCACAGTTgtgcaatacaataaaaaacatgtagtaCTTTAAATCTACCTGATTAAACTCAGcacataaatgtaatatttcccCAAAATCGCTGccttttaatttacttaaatgtacagtttttttacactataaggtgcacctaaaatcctttcattttcccataAATTGACAGTTCGCCGTATAATTCAGtgtaccttatgtataaatactACCAGTCAgctattaaagagcagtaaagccactctgatgaagtacagagttatacaggggTTTCGGTTTAGTTCCTCCAGGACCGAaactggagcagcataagcattagctgctaaacgcACTAAACGCTAGATCTATATCTAGCTAATTGTCACCCAGGCTTACCAGAAcattcagggttcctcaatGTAGCACTATAGGGTGCTACAGCGCTACTAGCACTAAGCTTGCTagtaatgctgctgcacctagctaatgctaatgctgctgcacctagccttagtgtaaatctggaaatctaaggttactgtaaataaacggaagctctttactcatttaaataaacatgagAGTTTTCTCaatgtggttttttttttttggaattacagttttgtttacgtagcttagctttacttaattacccccccccccaccccacccagcagtgagacctgctgattCAGAAGTAAAACATGACGACACCCTTGTTTCTTACTAGAGTCGCTTAAAATctgccttttaatccggtgcaccttatagtgcgaaaaatacGAATTAAATCAAACCAATCAGAAGTGCTTTGTGTTTTAGCGTATATACAGTAACTCATGTGaaaacaatacacaatacagtgtgatatattgtgcagctggTAATACATCTCAATGCCTTGTGCGCACCTAATACAACCTAATGCGTCTTCTTCAGCCTGATCAGCTGGGTGTTTTAAACATGTATCATCAGGTTTCTCAGGATGAGGGTTCGGCGTCGGCGGTTCCGTTGGCTTTACGATGAAAGCCGGTGTTCTGCTGCTGAACGAATTCAGCATAGGCTCCTTTTTTCTGCAGCAGCTCGTCGTGAGTGCCCTGCTCCACCACCTCGCCAGCCCGCAGGAAGATCACGTTATCAGCCAGCTCCACTCCACTCATCCTGTGGGTGATGAGGAGGATGGTGCGCTCGCTCGATTTTTTCAGCAGAGCCTGGTGCACc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219582 lncRNA upstream 16537 32633971 ~ 32635489 (+) True G162087
TU219536 lncRNA upstream 36557 32613718 ~ 32615469 (+) True G162046
TU219533 lncRNA upstream 72258 32577270 ~ 32579768 (+) True G162043
TU219534 lncRNA upstream 75721 32570552 ~ 32576305 (+) True G162044
TU219545 lncRNA upstream 316998 32334507 ~ 32335028 (+) True G162054
TU219606 lncRNA downstream 23616 32678351 ~ 32687544 (+) True G162107
TU219613 lncRNA downstream 81694 32736429 ~ 32738155 (+) False G162111
TU219617 lncRNA downstream 81694 32736429 ~ 32739609 (+) True G162111
TU219610 lncRNA downstream 82555 32737290 ~ 32738155 (+) False G162111
TU219612 lncRNA downstream 82555 32737290 ~ 32738155 (+) False G162111
XM_022679876.1 mRNA upstream 86136 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA upstream 86136 32377101 ~ 32565890 (+) False LOC107196951
XM_022679873.1 mRNA upstream 849463 31714912 ~ 31802563 (+) False satb1
XM_007233723.3 mRNA downstream 27007 32681742 ~ 32701604 (+) True LOC103041596
XM_007233722.3 mRNA downstream 66509 32721244 ~ 32729851 (+) True LOC103041297
XM_007233718.3 mRNA downstream 127339 32782074 ~ 32879256 (+) True LOC103040053
XM_022679879.1 mRNA downstream 250919 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA downstream 250919 32905654 ~ 32915649 (+) False LOC103039334
TU219521 other upstream 356997 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 503836 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1773699 30875038 ~ 30878327 (+) True hmgn2
TU219593 other downstream 59448 32714183 ~ 32719275 (+) True G162096
TU220729 other downstream 4099450 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 4755257 37409992 ~ 37411969 (+) True G163105

Expression Profile