RNA id: TU219613


Basic Information

Item Value
RNA id TU219613
length 302
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G162111
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 32736429 ~ 32739609 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTTTgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaacgactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaacaatatagcaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATATAGAaaccaacacagataccatagcaacaccttagaaaccacctagcaaccactttgaaaCAATAAagcaaccaacacagataccatagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219606 lncRNA upstream 48885 32678351 ~ 32687544 (+) True G162107
TU219598 lncRNA upstream 81264 32652026 ~ 32655165 (+) False G162099
TU219596 lncRNA upstream 81694 32652026 ~ 32654735 (+) True G162099
TU219582 lncRNA upstream 100940 32633971 ~ 32635489 (+) True G162087
TU219536 lncRNA upstream 120960 32613718 ~ 32615469 (+) True G162046
TU219592 lncRNA downstream 3832 32741987 ~ 32743737 (+) False LOC107196950
XR_001518293.2 lncRNA downstream 3899 32742054 ~ 32744007 (+) True LOC107196950
TU219788 lncRNA downstream 429562 33167717 ~ 33168084 (+) False G162239
TU219790 lncRNA downstream 429562 33167717 ~ 33168151 (+) True G162239
TU219801 lncRNA downstream 437975 33176130 ~ 33176329 (+) True G162247
XM_007233722.3 mRNA upstream 6578 32721244 ~ 32729851 (+) True LOC103041297
XM_007233723.3 mRNA upstream 34825 32681742 ~ 32701604 (+) True LOC103041596
XM_022679876.1 mRNA upstream 170539 32377101 ~ 32565890 (+) True LOC107196951
XM_022679877.1 mRNA upstream 170539 32377101 ~ 32565890 (+) False LOC107196951
XM_022679873.1 mRNA upstream 933866 31714912 ~ 31802563 (+) False satb1
XM_007233718.3 mRNA downstream 43919 32782074 ~ 32879256 (+) True LOC103040053
XM_022679879.1 mRNA downstream 167499 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA downstream 167499 32905654 ~ 32915649 (+) False LOC103039334
XM_022679881.1 mRNA downstream 179988 32918143 ~ 33043136 (+) True LOC103043655
XM_022679409.1 mRNA downstream 466552 33204707 ~ 33997444 (+) True LOC103027235
TU219593 other upstream 17154 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 441400 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 588239 32068862 ~ 32148190 (+) True G162017
XR_002651288.1 other upstream 1858102 30875038 ~ 30878327 (+) True hmgn2
TU220729 other downstream 4016030 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 4671837 37409992 ~ 37411969 (+) True G163105

Expression Profile