RNA id: TU219817


Basic Information

Item Value
RNA id TU219817
length 339
lncRNA type intronic
GC content 0.42
exon number 2
gene id G162255
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 33253405 ~ 33253768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcccatttctccccttggccctaccccttacccctaccccttcttttcgagtgtaatccttccggggtaaaatcctacccctaggaattgggacaacccttcaagcacccggtgaaaggtgaatcttattgaaaatagcctccataatatactagaaattgtatatcacactggttcccaacactggtcctggagcaggtaatgtgttacaaaaacaatataatgtgcaagaatatgggtcctcagtgacagaggaatcactggtatatcacaatgacgtttgtcaatgaacaataaatacataaataaatagcactgatttatgaccaggctactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219804 lncRNA upstream 56229 33196965 ~ 33197176 (+) True G162250
TU219801 lncRNA upstream 77076 33176130 ~ 33176329 (+) True G162247
TU219790 lncRNA upstream 85254 33167717 ~ 33168151 (+) True G162239
TU219788 lncRNA upstream 85321 33167717 ~ 33168084 (+) False G162239
XR_001518293.2 lncRNA upstream 509398 32742054 ~ 32744007 (+) True LOC107196950
TU219836 lncRNA downstream 227580 33481348 ~ 33483410 (+) True G162269
TU219850 lncRNA downstream 408071 33661839 ~ 33668497 (+) True G162281
TU219851 lncRNA downstream 450315 33704083 ~ 33705389 (+) True G162282
TU219903 lncRNA downstream 543672 33797440 ~ 33797674 (+) True G162329
TU219919 lncRNA downstream 583709 33837477 ~ 33886844 (+) False G162336
XM_022679881.1 mRNA upstream 210269 32918143 ~ 33043136 (+) True LOC103043655
XM_022679879.1 mRNA upstream 337756 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA upstream 337756 32905654 ~ 32915649 (+) False LOC103039334
XM_007233718.3 mRNA upstream 374149 32782074 ~ 32879256 (+) True LOC103040053
XM_007233722.3 mRNA upstream 523554 32721244 ~ 32729851 (+) True LOC103041297
XM_022679884.1 mRNA downstream 817391 34071159 ~ 34092737 (+) True LOC103045871
XM_015600786.2 mRNA downstream 817391 34071159 ~ 34092737 (+) False LOC103045871
XM_022679885.1 mRNA downstream 865025 34118793 ~ 34161754 (+) True LOC111194818
XM_022679886.1 mRNA downstream 865025 34118793 ~ 34161754 (+) False LOC111194818
XM_022679887.1 mRNA downstream 870858 34124626 ~ 34161754 (+) False LOC111194818
TU219593 other upstream 534130 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 958376 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 1105215 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 2375093 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 3500417 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 4156224 37409992 ~ 37411969 (+) True G163105

Expression Profile