RNA id: TU219850


Basic Information

Item Value
RNA id TU219850
length 255
lncRNA type intronic
GC content 0.30
exon number 2
gene id G162281
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 33661839 ~ 33668497 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggaggagaacatgatgccaagatgcatgaaaaaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaaactttatgaatatgaacttttttatttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagccatttctcattttctgcaaataaatgctctaaatgacatttttttaatttggaatttgggtgaaatggtgtctgtagtttatagaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219836 lncRNA upstream 178429 33481348 ~ 33483410 (+) True G162269
TU219817 lncRNA upstream 408071 33253405 ~ 33253768 (+) True G162255
TU219804 lncRNA upstream 464663 33196965 ~ 33197176 (+) True G162250
TU219801 lncRNA upstream 485510 33176130 ~ 33176329 (+) True G162247
TU219790 lncRNA upstream 493688 33167717 ~ 33168151 (+) True G162239
TU219851 lncRNA downstream 35586 33704083 ~ 33705389 (+) True G162282
TU219903 lncRNA downstream 128943 33797440 ~ 33797674 (+) True G162329
TU219919 lncRNA downstream 168980 33837477 ~ 33886844 (+) False G162336
TU219918 lncRNA downstream 183715 33852212 ~ 33886844 (+) True G162336
TU219965 lncRNA downstream 425416 34093913 ~ 34097597 (+) True G162373
XM_022679881.1 mRNA upstream 618703 32918143 ~ 33043136 (+) True LOC103043655
XM_022679879.1 mRNA upstream 746190 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA upstream 746190 32905654 ~ 32915649 (+) False LOC103039334
XM_007233718.3 mRNA upstream 782583 32782074 ~ 32879256 (+) True LOC103040053
XM_007233722.3 mRNA upstream 931988 32721244 ~ 32729851 (+) True LOC103041297
XM_022679884.1 mRNA downstream 402662 34071159 ~ 34092737 (+) True LOC103045871
XM_015600786.2 mRNA downstream 402662 34071159 ~ 34092737 (+) False LOC103045871
XM_022679885.1 mRNA downstream 450296 34118793 ~ 34161754 (+) True LOC111194818
XM_022679886.1 mRNA downstream 450296 34118793 ~ 34161754 (+) False LOC111194818
XM_022679887.1 mRNA downstream 456129 34124626 ~ 34161754 (+) False LOC111194818
TU219593 other upstream 942564 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 1366810 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 1513649 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 2783527 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 3085688 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 3741495 37409992 ~ 37411969 (+) True G163105

Expression Profile