RNA id: TU219903


Basic Information

Item Value
RNA id TU219903
length 235
lncRNA type intronic
GC content 0.36
exon number 1
gene id G162329
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 33797440 ~ 33797674 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atattacacatttattattcttattactgagtttctaaatgcttgttatatagacaaactatgaatattcttcagtaaatcCGTGGACTAATATTGGATATCAGTAATTCTAGTTTATATCTGCTGTTCATTCAATAAAAGCCCCATTCTGGGACGGAATTGAGCTTTTCTCACTATGGAGTGAATAGTTCTGTGCAGCTCCTATAAACAGCACGGTTGTTTGCACGGCACGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219851 lncRNA upstream 92051 33704083 ~ 33705389 (+) True G162282
TU219850 lncRNA upstream 128943 33661839 ~ 33668497 (+) True G162281
TU219836 lncRNA upstream 314030 33481348 ~ 33483410 (+) True G162269
TU219817 lncRNA upstream 543672 33253405 ~ 33253768 (+) True G162255
TU219804 lncRNA upstream 600264 33196965 ~ 33197176 (+) True G162250
TU219919 lncRNA downstream 39803 33837477 ~ 33886844 (+) False G162336
TU219918 lncRNA downstream 54538 33852212 ~ 33886844 (+) True G162336
TU219965 lncRNA downstream 296239 34093913 ~ 34097597 (+) True G162373
TU220004 lncRNA downstream 372726 34170400 ~ 34177227 (+) False G162403
TU220005 lncRNA downstream 372726 34170400 ~ 34171317 (+) True G162403
XM_022679881.1 mRNA upstream 754304 32918143 ~ 33043136 (+) True LOC103043655
XM_022679879.1 mRNA upstream 881791 32905654 ~ 32915649 (+) True LOC103039334
XM_022679880.1 mRNA upstream 881791 32905654 ~ 32915649 (+) False LOC103039334
XM_007233718.3 mRNA upstream 918184 32782074 ~ 32879256 (+) True LOC103040053
XM_007233722.3 mRNA upstream 1067589 32721244 ~ 32729851 (+) True LOC103041297
XM_022679884.1 mRNA downstream 273485 34071159 ~ 34092737 (+) True LOC103045871
XM_015600786.2 mRNA downstream 273485 34071159 ~ 34092737 (+) False LOC103045871
XM_022679885.1 mRNA downstream 321119 34118793 ~ 34161754 (+) True LOC111194818
XM_022679886.1 mRNA downstream 321119 34118793 ~ 34161754 (+) False LOC111194818
XM_022679887.1 mRNA downstream 326952 34124626 ~ 34161754 (+) False LOC111194818
TU219593 other upstream 1078165 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 1502411 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 1649250 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 2919128 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 2956511 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 3612318 37409992 ~ 37411969 (+) True G163105

Expression Profile