RNA id: TU219965


Basic Information

Item Value
RNA id TU219965
length 3561
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G162373
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34093913 ~ 34097597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaatcatgggtgtgttttgggcgtaacatgatattaaaccaatcagtgtatcagtcatcattctctttaagaggcagatgagctctgactttggcgcgttcgtatcttaacagtgcggcgcttttgcgagtctcagcagaggatactgagctgctcattcacactgtgaagatacaccagcagctcttttaagggaacagcgatgttattttattctttgttcTGATTATTGCAGAGTTAAAAGTCGGGTGTGTGTGATTATCACGTGGGATTGAACAAGCGCTGGGTGCACCTATAGAAATAGACTCTGATGATGAtcgactgttgtcagggttttaatcagtcagtggagctcctgtggagttttccaccaccaaaatatacagaaacaagtcagaaatttacctgaatacacctcacttccagaccaccacacccatcagtgatcagatttattcctaaactctataaacactattttaacagcgcgggaccaaggtgtgaaaatagactgttgatggggtgtaagatagcaatcaGAATCACAATGTATGATAGGGCCCAAAGAGTACAAGTCCACTTGTCCTTTCACCTCaacgcatcctattcatttcaatagagAGAGCTGCTGCATGTATTTAGAACATGACTGGTTGCTTTGCAAAGGCagattttaattttatcaaatgAGCACAGCTAATGGGCAGTGTCTAGCCAATCAGGGCAGAGAGGGCTGGTACGTTATACAAGCATCACACACAGAGCACACATGCCTTTCACACATGGAGAAAAAAGGCTTTTAATGTTGGTATCTAAATCTtaaattaagaagtttaaatcTACCATTTTTTAaggcttttctttttcttagtCAGTTCTAAATAGTCCAGCAGACTAAAGGACTTCAAAACTTCTATCGAAACAAAATTCACAAGTGACTTCACAAATTTAAAGCTGGCATACTTTCTGTGGCTTCGTTTTCTTCACAGATTAAAATCAGAGCTGTACAAAAAGTTTTAATTCAATTGAATTGAAAATGACTCCTAAATTCTGAATCAAATTggattgtcccacccatttagctgtTACTCAGCTCTatatccccccatcactagtgattccacaacaccaggagggtgaagactagcacatgcctcctccgactcatgtgaagtcagactccgcctcttttcaaactgctgctgatgcagcattgctgagtagcatcacagcgcactcggaggaaagcgcagcgactcggttctaatacatcagctcacagacgcagccttgtgctgatctacatcaccctagaagtgataagcggaaaaagcgccatctactgtacccacccagagagaacaaggcccattgtgctctctcagagctctggcagctgatggtaagctgcatgactgggattcgaaccagcaatcttttTATCATAATGGCAGCAAGTATTATATTCTCACTgatatgtgattaaaaactgatCTAAATTGCAATAAGTTCAACTCTACCTGTAATTTCAAATGTAATTCAATTTCAAACTCATTAAATTGAATTCAAGTCTAAAATTCTGAATTTTGCTGGTTAGAATCTGATGCATCAGAgctgcctagtgatgctgcatcagcagcagttgggaAAGCGGTGGGtttgatttcacatgtatcagtaTAAGCTGGCAGTGTGTGTGGGCATCTCtgacatatataaatatatatagagagcactgaaaaaaaataagagagcactcaaaaaaaattgagtttctttgatttaccaaattgaaaacctctggaatataatcgagaggaagattgatgatcacaaaccatcaaaccaagctgaactgcttgaatttccgcaccaggagtaaaggcaaaaagttatccaaaagcagtgtgaaagactggtggaggagaacatgccagtatgcatgaaaactgtgattaaaaaacagcttccgcagctgatggcaagctgcatggctgGGATTCAAACCTTTTTGGCCTTAGTCCGCTGGCACCACTCACACCCCTATAATTAGGGTGTATTTAACAATGAAgctttacagtacagtatatgatTACAACATGAGTTTCATACAGATGTGTCTGTacttccaaaaatatatatatattttgaattgTACTACATTTTATACACATCTCTAGCAATGCTcacaacactaggagggtgaggacAAACGCATGCCAAGAGATCCAGCATAGCAAAAAGCATTGAATCAAAATGCAAATGGACTTCTATTATAAAAAGGCACTTCACACAGATCCACTTctttcatcacacacacacaaaactatatataaaaagagagagcagggcACTAACACACAGTCAAATATGACGTTTCTCATGTAGTTAAACAAATctgaacaaaacattaaatttcccttttttttcctttagcaagtaagaaaatgtaacaattTATTCACTATCTTGGTAATTAACATAATACACACTGACTTGCCAacagtcatgggacagcagtatgttaACTGATGatgttaattttagttttatctcAGGGAATGGCTTGCAAATGCTTgaacctgtataagttgtgaggtgttatcttgttgaACACTggcagtgtgctcatggcaaggtgatttGAGTTATTTAAGTGAGTTTAAGTAAGGTCTGATAGTGAGCGCAGATGGATGGAACATTTATGTGCATATATTTAACAATTCCTCTATTCACAGTGTCACTTGTGTACTAGGAATACAAGATAAGCGACACTAtttaccatccacagtggacagtagtTGGGCAGACGAtagtaatgatcgtgactggcgCCTTTTGGCTAGAACTTTCCATGTGAGCAGACAAGCAACTctagcattctttagcttccagaACGACTCTAGAACGAGTggcccaagagtgaacacaaacaTGCATGCAGGCAACACAGGCATTTTTTTACCCAATTGCTTGtgtgaaagaaagggagagaaagctGCTCCctcgtgtgcatattcatgaagtgcatgcaaaagagagagggatctgattggcctgttctatGAAAAGAgactgtgagtcagccaatcaattttaagtgttggtgggcagtgtttttcttctcctcctgaATGGGATGGTGggatgcgttcaggagcatcatggctcccatcaaaacttttcacctctgactactccaaagtatatccatgtctggtaaaaaTACATTGCAAGTTTCTGCCCTATGAAATGGAAttatttcagtgtgtattaTGTTAATCGTGATTTTAAAAGGCTGAAACATAGTATTCTTTTAcgcatgtaaaaataataaacagcctCCACACTGGGGGGTTAGTTTAACAAACTGTTATAACAAAGACTGCCCTTTATTCCTTcatataaaatcataaataCAGCCTTTTTTTGGAAGTttcccttcattttttttaccattaaagtaataataataaaaatacacagtgaTCGTTAAAGATGTATTTAAGTTTAgataaagacattaaaactgtattaaatttGGAACGATTTGCAAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219919 lncRNA upstream 207069 33837477 ~ 33886844 (+) False G162336
TU219918 lncRNA upstream 207069 33852212 ~ 33886844 (+) True G162336
TU219903 lncRNA upstream 296239 33797440 ~ 33797674 (+) True G162329
TU219851 lncRNA upstream 388524 33704083 ~ 33705389 (+) True G162282
TU219850 lncRNA upstream 425416 33661839 ~ 33668497 (+) True G162281
TU220004 lncRNA downstream 72803 34170400 ~ 34177227 (+) False G162403
TU220005 lncRNA downstream 72803 34170400 ~ 34171317 (+) True G162403
TU220007 lncRNA downstream 105306 34202903 ~ 34203106 (+) True G162405
TU220010 lncRNA downstream 122515 34220112 ~ 34221336 (+) True G162408
TU220050 lncRNA downstream 301637 34399234 ~ 34399448 (+) True G162442
XM_022679884.1 mRNA upstream 1176 34071159 ~ 34092737 (+) True LOC103045871
XM_015600786.2 mRNA upstream 1176 34071159 ~ 34092737 (+) False LOC103045871
XM_022679409.1 mRNA upstream 96469 33204707 ~ 33997444 (+) True LOC103027235
XM_022679881.1 mRNA upstream 1050777 32918143 ~ 33043136 (+) True LOC103043655
XM_022679879.1 mRNA upstream 1178264 32905654 ~ 32915649 (+) True LOC103039334
XM_022679885.1 mRNA downstream 21196 34118793 ~ 34161754 (+) True LOC111194818
XM_022679886.1 mRNA downstream 21196 34118793 ~ 34161754 (+) False LOC111194818
XM_022679887.1 mRNA downstream 27029 34124626 ~ 34161754 (+) False LOC111194818
XM_022679889.1 mRNA downstream 78511 34176108 ~ 34199772 (+) True LOC103028011
XM_015604004.2 mRNA downstream 116289 34213886 ~ 34217803 (+) True LOC103027681
TU219593 other upstream 1374638 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 1798884 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 1945723 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3215601 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 2656588 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 3312395 37409992 ~ 37411969 (+) True G163105

Expression Profile