RNA id: TU220010


Basic Information

Item Value
RNA id TU220010
length 1225
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G162408
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34220112 ~ 34221336 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTCTGAGCGACGGTTTCAAGTAGTATGATGAAGACACTGGTTTATGTAAGAAACTAAAAGTAGCTTTTATCTTTGCTCTTCAGTAAAACAGCTTATTCAGAGcaaactcaacacacaccagGCTGGATGAAGAACAGCACGCTGGAAAGGATGAATATTAATGGCGTCACTTGCAGTCCTCCGCGCTCTCGAGGaaaggctgaagaagctgtgagATATGGTTTTCAGATATAGATACTGGGCCTAAAGTGATTTCTGGAGAGGACGAGGCCACACTGCAGGACCTTTAGAGTGGGATACGGGGGGCTGCTGATTATCAGTGCTGCCTCTCTTGCCCACTCAGAGTGAGGCCTTTGCTCCTGAAATCTGAGCTTGCTCTACTCGCTGATGCCACTTGGCACTGGTGAGTGGTGAGTGTGCTTGGTTCTGACCTGGAGTGTCTTTTTTTGactttaatttgattattttaaccccttaaattgtcgttcttatatttttcagattatcaaacaaactttaatatcagacaaagataacctgagtaaatataaaaatcactttttgaaggatgatttaatttaataaagttaaaaactatccaaaccaatctagccctgtgtaaatgtgtaaatatgtttGCCCTCTAAActtaataacttggttgtgctaCCCTTGGTtgagctttactgataacttaagtataaacatcctgtttaagatcatccacagcatcttaaACAATCAGACTTTAATTAGACCCTCCAAAtccttaatttagtttttttaataagtcaTACAGATGTGgactttttgtgtttgtgtgctttgggtcattgtcctgctgcagaacccaagtacacctgagcttgaggtcacgaacagatggtcaGATATTCTCCTttagcagaattcctgcttctatctattacagcaagttgtccagaccctgaagcagcaaagcagccccagacaatcacactaccaccaccatgctttacatccagtatgatgttctttttttcggaaattatgtgttagtttttgttttaagccagatgtaatgggacacacacctttctaaaaaaaagttccaTTTTTGTTTCGTCATACCCaggaatatttacccaaagctTAGGAGATCATCAGGATGTTAgatggtaaatgtgagacgggtggttgtgttgtgtttgatgttagttggtaaatgtgagacgggtggttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220007 lncRNA upstream 17006 34202903 ~ 34203106 (+) True G162405
TU220004 lncRNA upstream 42885 34170400 ~ 34177227 (+) False G162403
TU220005 lncRNA upstream 48795 34170400 ~ 34171317 (+) True G162403
TU219965 lncRNA upstream 122515 34093913 ~ 34097597 (+) True G162373
TU219919 lncRNA upstream 333268 33837477 ~ 33886844 (+) False G162336
TU220050 lncRNA downstream 177898 34399234 ~ 34399448 (+) True G162442
TU220132 lncRNA downstream 280264 34501600 ~ 34517219 (+) True G162505
TU220145 lncRNA downstream 433625 34654961 ~ 34655440 (+) True G162518
TU220162 lncRNA downstream 555871 34777207 ~ 34783691 (+) True G162530
TU220165 lncRNA downstream 571197 34792533 ~ 34792826 (+) True G162533
XM_015604004.2 mRNA upstream 2309 34213886 ~ 34217803 (+) True LOC103027681
XM_022679889.1 mRNA upstream 20340 34176108 ~ 34199772 (+) True LOC103028011
XM_022679885.1 mRNA upstream 58358 34118793 ~ 34161754 (+) True LOC111194818
XM_022679886.1 mRNA upstream 58358 34118793 ~ 34161754 (+) False LOC111194818
XM_022679887.1 mRNA upstream 58358 34124626 ~ 34161754 (+) False LOC111194818
XM_022679893.1 mRNA downstream 78682 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA downstream 78682 34300018 ~ 34315224 (+) False mios
XM_022679894.1 mRNA downstream 97877 34319213 ~ 34349880 (+) True LOC103044586
XM_022679895.1 mRNA downstream 586170 34807506 ~ 34839027 (+) True pepd
XM_022679896.1 mRNA downstream 845982 35067318 ~ 35512777 (+) True chst8
TU219593 other upstream 1500837 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 1925083 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 2071922 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3341800 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 2532849 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 3188656 37409992 ~ 37411969 (+) True G163105

Expression Profile