RNA id: TU220162


Basic Information

Item Value
RNA id TU220162
length 710
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G162530
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34777207 ~ 34783691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acatgagACAAACGGGAGGATTAGAGGAGTAGCTGCTCACTTACAGGGGTAATACTGcaaccaaaacacagcaaaacatgCAAATTAACTACCGAATACACTACAAAACCACACAATATATTATGTAAGAAAAGGTTGGAAATGCTTACAAAATCAAGACTAAACCACTACAAACCCTGaaataaacctgcagtgaacAACTAAACTCCCCACCCCAGCCAGCAGCCCAcaagGTACAAGCTTAAACCCAACCAATTGAAAATAGAATTAACCCCATGGattatctttattaattaataaactatttcTATAAAAACATACACCCAACCCACATTACCCCAAATCCACACTACTACCTACACCCGGCCACTGGCTAGGGTAATTGGTGGCGTACAGCGTCCCAGCACAGGTTGGCCACCCTGTCGGAGAcaacaaaatcaaattaaataatcacacacacacacgcaaacgtATCCCAATCACACATTGACTGCACTCACCCCATATATTCCCCAACATCCACCAGACCCAACTTCCCAACTAATAGGTCACAAGGGAATTAACCAGGTAAGTAAAACAGTTCCAAAACATATACACAATCAATCCCTCACCCACACAACACATCCACTCAACAAACATAAACCTGCACGCCACCAACCTTACCCCCTGCACAAACGGGAGACCCAAGAGAGCCGACGCCTCCAACTTCC

Function

GO: NA

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220145 lncRNA upstream 121767 34654961 ~ 34655440 (+) True G162518
TU220132 lncRNA upstream 259988 34501600 ~ 34517219 (+) True G162505
TU220050 lncRNA upstream 377759 34399234 ~ 34399448 (+) True G162442
TU220010 lncRNA upstream 555871 34220112 ~ 34221336 (+) True G162408
TU220007 lncRNA upstream 574101 34202903 ~ 34203106 (+) True G162405
TU220165 lncRNA downstream 8842 34792533 ~ 34792826 (+) True G162533
TU220166 lncRNA downstream 9208 34792899 ~ 34793146 (+) True G162534
TU220167 lncRNA downstream 9878 34793569 ~ 34793832 (+) True G162535
TU220228 lncRNA downstream 60596 34844287 ~ 34892308 (+) True G162581
TU220233 lncRNA downstream 125046 34908737 ~ 34909108 (+) True G162583
XM_022679894.1 mRNA upstream 427327 34319213 ~ 34349880 (+) True LOC103044586
XM_022679893.1 mRNA upstream 461983 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA upstream 461983 34300018 ~ 34315224 (+) False mios
XM_015604004.2 mRNA upstream 559404 34213886 ~ 34217803 (+) True LOC103027681
XM_022679889.1 mRNA upstream 577435 34176108 ~ 34199772 (+) True LOC103028011
XM_022679895.1 mRNA downstream 23815 34807506 ~ 34839027 (+) True pepd
XM_022679896.1 mRNA downstream 283627 35067318 ~ 35512777 (+) True chst8
XM_007251852.3 mRNA downstream 766201 35549892 ~ 35603715 (+) True kctd15
XM_007251851.3 mRNA downstream 766878 35550569 ~ 35603715 (+) False kctd15
XM_015606487.2 mRNA downstream 769509 35553200 ~ 35603715 (+) False kctd15
TU219593 other upstream 2057932 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 2482178 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 2629017 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3898895 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 1970494 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 2626301 37409992 ~ 37411969 (+) True G163105

Expression Profile