RNA id: TU220167


Basic Information

Item Value
RNA id TU220167
length 264
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G162535
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 34793569 ~ 34793832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aactaaactattccaggtgattctacctcatgaagactctgagaaaactaaactattccaggtgattctacctcatgaagactctgataaaactaaactattccaggtgattctacctcatgaagactctgagaaaactaaactattccaggtgattctacctcatgaagactctgataaaactaaactattccaggtgactctacctcatgaagactctgataaaactaaactattccaggtgattctacctcatgaagactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220166 lncRNA upstream 423 34792899 ~ 34793146 (+) True G162534
TU220165 lncRNA upstream 743 34792533 ~ 34792826 (+) True G162533
TU220162 lncRNA upstream 9878 34777207 ~ 34783691 (+) True G162530
TU220145 lncRNA upstream 138129 34654961 ~ 34655440 (+) True G162518
TU220132 lncRNA upstream 276350 34501600 ~ 34517219 (+) True G162505
TU220228 lncRNA downstream 50455 34844287 ~ 34892308 (+) True G162581
TU220233 lncRNA downstream 114905 34908737 ~ 34909108 (+) True G162583
XR_002651202.1 lncRNA downstream 151812 34945644 ~ 34954135 (+) True LOC111194737
TU220259 lncRNA downstream 298039 35091871 ~ 35093395 (+) True G162597
TU220261 lncRNA downstream 367549 35161381 ~ 35175910 (+) True G162599
XM_022679894.1 mRNA upstream 443689 34319213 ~ 34349880 (+) True LOC103044586
XM_022679893.1 mRNA upstream 478345 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA upstream 478345 34300018 ~ 34315224 (+) False mios
XM_015604004.2 mRNA upstream 575766 34213886 ~ 34217803 (+) True LOC103027681
XM_022679889.1 mRNA upstream 593797 34176108 ~ 34199772 (+) True LOC103028011
XM_022679895.1 mRNA downstream 13674 34807506 ~ 34839027 (+) True pepd
XM_022679896.1 mRNA downstream 273486 35067318 ~ 35512777 (+) True chst8
XM_007251852.3 mRNA downstream 756060 35549892 ~ 35603715 (+) True kctd15
XM_007251851.3 mRNA downstream 756737 35550569 ~ 35603715 (+) False kctd15
XM_015606487.2 mRNA downstream 759368 35553200 ~ 35603715 (+) False kctd15
TU219593 other upstream 2074294 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 2498540 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 2645379 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 3915257 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 1960353 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 2616160 37409992 ~ 37411969 (+) True G163105

Expression Profile