RNA id: TU220248


Basic Information

Item Value
RNA id TU220248
length 424
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G162593
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35498034 ~ 35520791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtaagtgaacTCAAACGGACGCTTCTTTCttatccaaaaaataaaaaaaatgtaaaactcttcCGTTGTCTGCCCCTCCCCCTTCCCCTCCCCCCTCCACTGAAAACACAGATTCTACTGTAcgtaaaagacattttttttgtgaaggtGAAGCTGAGAAGTGAATGTATTCCATCCGTCGTTGGTGCACAAGTGTACAAAACCCGTCATCTAATGCCCTTTGCCTTATTTTTACACTGCCAATCAACCAGTGTGAATCAGGAAGACATTCTTCaggtagctctctctctctctctctttctctctctctcttctctctctctcgttctcctcctctctctttctttctgttga

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220319 lncRNA upstream 51693 35441683 ~ 35446341 (+) True G162635
TU220288 lncRNA upstream 157099 35340227 ~ 35340935 (+) True G162620
TU220285 lncRNA upstream 178387 35317946 ~ 35319647 (+) True G162617
TU220276 lncRNA upstream 262946 35234290 ~ 35235088 (+) True G162610
TU220275 lncRNA upstream 263330 35234229 ~ 35234704 (+) True G162609
TU220439 lncRNA downstream 287150 35807941 ~ 35814793 (+) True ss18l2
TU220448 lncRNA downstream 307229 35828020 ~ 35828825 (+) False G162746
TU220449 lncRNA downstream 307229 35828020 ~ 35828825 (+) False G162746
TU220450 lncRNA downstream 307229 35828020 ~ 35828825 (+) False G162746
TU220453 lncRNA downstream 307229 35828020 ~ 35828825 (+) True G162746
XM_022679895.1 mRNA upstream 659007 34807506 ~ 34839027 (+) True pepd
XM_022679894.1 mRNA upstream 1148154 34319213 ~ 34349880 (+) True LOC103044586
XM_022679893.1 mRNA upstream 1182810 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA upstream 1182810 34300018 ~ 34315224 (+) False mios
XM_015604004.2 mRNA upstream 1280231 34213886 ~ 34217803 (+) True LOC103027681
XM_007251852.3 mRNA downstream 29101 35549892 ~ 35603715 (+) True kctd15
XM_007251851.3 mRNA downstream 29778 35550569 ~ 35603715 (+) False kctd15
XM_015606487.2 mRNA downstream 32409 35553200 ~ 35603715 (+) False kctd15
XM_007251853.3 mRNA downstream 265539 35786330 ~ 35803285 (+) True lsm14a
XM_007251854.3 mRNA downstream 265539 35786330 ~ 35803285 (+) False lsm14a
TU219593 other upstream 2778759 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 3203005 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 3349844 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 4619722 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 1233394 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 1889201 37409992 ~ 37411969 (+) True G163105

Expression Profile