RNA id: TU220259


Basic Information

Item Value
RNA id TU220259
length 283
lncRNA type intronic
GC content 0.35
exon number 2
gene id G162597
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35091871 ~ 35093395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaggttagagttagttTTTTACActaagattaagGTTAGGGGTAAAGATTTGGACTGAGATTAAGGTTAGAGTTTAATTGTACACTGAGATGAAgtttaggatttggactgagttTAGGGTTAGTTTTTACAgtgagattaaggttagggttaggatttggattgaggttaaggttaggttttggACTGAGATTAAGATTAGAGTTACGTTTTACACTGAGATTAAGGTTAGTGTTTGGTTTCGactgagattaaggttaggattagggtgTGTGGTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651202.1 lncRNA upstream 137736 34945644 ~ 34954135 (+) True LOC111194737
TU220233 lncRNA upstream 182763 34908737 ~ 34909108 (+) True G162583
TU220228 lncRNA upstream 199563 34844287 ~ 34892308 (+) True G162581
TU220167 lncRNA upstream 298039 34793569 ~ 34793832 (+) True G162535
TU220166 lncRNA upstream 298725 34792899 ~ 34793146 (+) True G162534
TU220261 lncRNA downstream 67986 35161381 ~ 35175910 (+) True G162599
TU220267 lncRNA downstream 103682 35197077 ~ 35197987 (+) True G162604
TU220275 lncRNA downstream 140834 35234229 ~ 35234704 (+) True G162609
TU220276 lncRNA downstream 140895 35234290 ~ 35235088 (+) True G162610
TU220285 lncRNA downstream 224551 35317946 ~ 35319647 (+) True G162617
XM_022679895.1 mRNA upstream 252844 34807506 ~ 34839027 (+) True pepd
XM_022679894.1 mRNA upstream 741991 34319213 ~ 34349880 (+) True LOC103044586
XM_022679893.1 mRNA upstream 776647 34300018 ~ 34315224 (+) True mios
XM_007242176.3 mRNA upstream 776647 34300018 ~ 34315224 (+) False mios
XM_015604004.2 mRNA upstream 874068 34213886 ~ 34217803 (+) True LOC103027681
XM_007251852.3 mRNA downstream 456497 35549892 ~ 35603715 (+) True kctd15
XM_007251851.3 mRNA downstream 457174 35550569 ~ 35603715 (+) False kctd15
XM_015606487.2 mRNA downstream 459805 35553200 ~ 35603715 (+) False kctd15
XM_007251853.3 mRNA downstream 692935 35786330 ~ 35803285 (+) True lsm14a
XM_007251854.3 mRNA downstream 692935 35786330 ~ 35803285 (+) False lsm14a
TU219593 other upstream 2372596 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 2796842 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 2943681 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 4213559 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 1660790 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 2316597 37409992 ~ 37411969 (+) True G163105

Expression Profile