RNA id: TU220450


Basic Information

Item Value
RNA id TU220450
length 299
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G162746
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 35828020 ~ 35828825 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctccgcacgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtaggtgagctccgtggtacagttaaaaagctctgcgcgacagtaggtgagctccgcggtacagttaaaaagctctgcgcgacagtatgtgagctccgcggtacagttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220439 lncRNA upstream 13227 35807941 ~ 35814793 (+) True ss18l2
TU220248 lncRNA upstream 307229 35498034 ~ 35520791 (+) True G162593
TU220319 lncRNA upstream 381679 35441683 ~ 35446341 (+) True G162635
TU220288 lncRNA upstream 487085 35340227 ~ 35340935 (+) True G162620
TU220285 lncRNA upstream 508373 35317946 ~ 35319647 (+) True G162617
TU220553 lncRNA downstream 290556 36119381 ~ 36120402 (+) False pygo1
TU220552 lncRNA downstream 292897 36121722 ~ 36123863 (+) True G162829
TU220565 lncRNA downstream 303590 36132415 ~ 36169727 (+) False ccpg1
TU220583 lncRNA downstream 351015 36179840 ~ 36181301 (+) True G162848
TU220585 lncRNA downstream 353935 36182760 ~ 36183548 (+) True G162850
XM_007251858.2 mRNA upstream 16118 35807865 ~ 35811902 (+) False ss18l2
XM_007251853.3 mRNA upstream 24735 35786330 ~ 35803285 (+) True lsm14a
XM_007251854.3 mRNA upstream 24735 35786330 ~ 35803285 (+) False lsm14a
XM_007251855.3 mRNA upstream 24735 35786330 ~ 35803285 (+) False lsm14a
XM_015606487.2 mRNA upstream 224305 35553200 ~ 35603715 (+) False kctd15
XM_022679900.1 mRNA downstream 60129 35888954 ~ 35909612 (+) True gpi
XM_007251863.3 mRNA downstream 167147 35995972 ~ 36064422 (+) False nedd4
XM_007251862.3 mRNA downstream 191100 36019925 ~ 36064422 (+) True nedd4
XM_022679902.1 mRNA downstream 244981 36073806 ~ 36110407 (+) True prtg
XM_007251884.3 mRNA downstream 244982 36073807 ~ 36110407 (+) False prtg
TU219593 other upstream 3108745 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 3532991 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 3679830 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 4949708 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 925360 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 1581167 37409992 ~ 37411969 (+) True G163105

Expression Profile