RNA id: XM_022679908.1


Basic Information

Item Value
RNA id XM_022679908.1
length 3605
RNA type mRNA
GC content 0.47
exon number 11
gene id ccpg1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36132415 ~ 36169745 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGCTTTGTTGTTGATGTTGGTATAGGCAGCGATGGTGTTTTGAGGTGAAGTGCTGCTCCTGCATAGAGGACATTTCATCAGCCCTGCTGTAGCCGTGGATACAGATATCTCTGACAGCTGATTACAAGATGTCAGAAAGCTCCAGTGATACAGAGTCCTCGTGTGGGTGGACTGTTATCAGCAATGAGGGCTCAGACATCGAAACTCTGGGGGCTGAGAATGGGGCGGATTATGATCCGGAGGAGACAAACACAACTCCTGCCCCAGATCAGCCCAATTCTCCACAAGATGAGGATGCAGAGGCAGCTGGAGACTCTTTTCTGGATGCCACTCTGAAAGAGGAGACTGTGGTGGAAGCAGAGTCTGGCCAGCAGGCAGGAGAAGAGGCGGGGCTGGAGGAACATGTGACACTCTGCTCCTCAAGTGATCACTCTGACATCTTCACCCTCGGAGATAACAGGGAGGTGGAGATCGGCGCATGGGAGGGGCCTGTTGCTAAGGAGGATGAGGAGACAACAATTGATGAGCTGTACCTGGGAACCTCGTCAAGCAGCCAGTACACTTTCAGTGCTGCAGAGACAAtcttcCCAGCAGAGCGTCCTGTGCGCAGAGactccagcagcaccagcacTGAAGATGAGGATGGTGAGACGAAGGCCAGTCCGGTAGTGAGGAGGCGCAGGCTGAGGAGGAGCACGGCTGGCTCTGAGCCAGAGGAGCATCAGGAGGTGCAGAAAGAGCAAGACGAGGGTGGTGATGGAGCTGAGGAGGAGACGGAAGAGCACCGGGAGGCTCGTGTTTTTGCCCCGCAGCAGCGGCAGGTCAGCGGGACGCTCAACAAGTGCATCCTGCTCGCCCTCATCATTGCCATCAGCATGGGTTTTGGACATTTCTATGGCACGGTGCAAATTCAGGAGAGACACAGGATGGTGGAGAAGATCCGTGTGAACGAGCCGAGTGAGACCCGAGAGCTTCATCAGTGTCGGAGCGAGAGAGAAGCTGTCACTAAGGATGTGGTTGAGAGTCTGAGAGAAGACTTAGAAGAAAAGCGGGACATGGTGTTGTCACTGACAGGCATTATGGATAAGATTACCAAAGAAAACCAGCATCTCCGAGCAAAAGAAGTTGAactacagACTCAGAGAGAAGATCTGtttgaacagcttcagcaggCCAAGAGTGAGATGGAGTCTCGGCAGAAGTACCTGGCTTCAGAGAACCGTGCTCTGAAGACCACCCTGGAACGCGAGGAGGCGTCACTGTCCACACTGCAGGACGAACTGCGGCACCTCCGCGCTCAAATCCGCGAGCTGGAGGAGAAAGGAGCGGGTTCCGATTCCATCCTGTCTGAAAACCAACGCCTAAAGCACCACCTTCTGGAGGAGAAGCAGAGGGTCCGAAGTTTCCTCAACCAGAAGGAGGCACTGATGGCGGAGGCTCAGGTTCTACGGAAGGAGCTGGACAAGGAGCGGAAGGTGACGGACAGGCTGAAGGAAGAGTTAGAGGAATTGAGCCAGCAGGATTTAGGAACAGAGGAGGATCCCGAAACTGAGGAACTGCAGACACGACTTCAGGAGCTGGAGAAGAAGCTGAGCTTTGAGCAGCAGCGTTCTGATCTGTGGGAACGACTCTACGTGGAGTCGAAAGAAGAGAGATCCAAAGGCGACAGGCAAGTCAAGTCCAAGAAACCCAAAGATGGAATGATGGGGAAGGTGAAGGAGACCTTCGATGCAGTGAAAAATTCCACCAAGGAGTTTGTCCACCACCACAAGGAGCAGATCAAAAAGGCCAAGGAAGCAGTGAAGGAGAACCTCAGGAAGTTCTCGGATTCCGTCAAGTCCACGTTCAGGCACCTGAAGGACTCTGCCTCCAACATGTTTGACAAAAAACAGCGACCACAGGATAAAAGGTTCCACGAGAGGAAGCATGCAAAAATGGATCATCAGGAGTTCCAGGATGAGCCTTACAAAGAACAGGTTAACCAACAAATGGATGATGCCCACTGGCAGCCCCACAGGCCTTTGCACCAACACCCCAGCAAATCCACAGTGGACTCTTCCTTCCAGACTGACCACAACACACGTAATTCAGGCGACCGCAAGGAGCAAAGCACTACTGGACAGAGATCACAAAGGCCCAAAGGCTGTACCGGCGTCTTTGACTGCGCCTACCAAGAGTTCATGAGCCTTTTCAACAAGGCCATGGACCCCATAAGAGCAGATGAGTTCACCCAGCTTCTCCACAGTTACCTTCAGCAGGAAGTGGGACATTTCCATCACTGGAGCGAGCTGGAGAGCTTCATTAACAATTTCTTCCACAATGGGATCTTTATTCACGATCAGATGCTGTTCACGGACTTCGTCAGTGGCGTTGAAGACTATCTGGAAGATATCGATGCATACCAGGGTGGGGATAGTGACCTATTTGAGGATCTGGATGATTACATATACAGGCACTTCTTTGGGGATACATACTCAAAACCTTACAGCCCAAGgTCTGAGACACAGTAGCCTCTGCATGTTGACAATGACTTGCTGTGAGCGACGCGTGAAGCtttagggtaaaaaaaaaaaaaacttaaatatttactgtGTGTAAATTTACAGTCGACCTTTTGAAGAAGGGCCTGGGCCGAAGTTCAAAGCAGAGCAGGAGTGTCAGCGGCCGCAGCGAAAACACCAGCATTCACGCCCTGTGCACCCACGAGAACGGAAATGGGCTCGGTCGGGACGAGGGTCCGACAGACACTTTACTGAAGTCAAAATCGAACTGGGGCCCATGCCGTTCGACCCAAAATACTAACAATCCATGCAAATTCTAGATCTTAGTTGTTTTCATTGTAGCACTTAACCTAAAGTGATCctgttgcttttttttcataataagaCAAATGAAAGCATTGTCTTCCCCTTTTCCCTCCCCCTTATTTGTGATTTTGCACAATTGTACATGCTGGTTGAATGTCTTCTagctttttgtctctctttgttTGTGATCAGCTGTTGCTAGATCAGATTATTTAGAGTCAGTAGTGTTGCTTTTTCAACGCTTAAGCTACTTAGCTTACTTGCAGggcctttaaaaaagttaattatcAGGTTTTCGTTCTAGTATTCCATGTtggaaaagttaaaaaaaaaaaaaaaatcagaatataaGAATTCaattaaactaataattaatattctgtatatattaaattataattagcATAAAAAATGAGAAGGAAATTCTGaataacaaaacaatttattttcttAAGGACCAAATATATAAGCAGTGTTTGTTCTACTGAAAAATTCCTTCCATGCTGAGATGCCTGATTTCTTTGTTGTAGTTTGGTGAGCATTGTTTTTTGTACTGCTGTCAAAATGTCAACACTGATTAGAGATGATCTATTAGAAATTATATGGAGGGGTGAATTTAAGTGGCCACTTTGagtacagttttcttttttctttttttgcatttatttgttgCACAAGTAACATTCCGGTTAAAGCCTTGTTTTTCAGAAAATTCTGCAACAGAATCATTTTTGTTTGCCGTTCAGCAAATCAGTACGCATGAAAATCTTTACAATAAAAACTGCAGTTTCCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220552 lncRNA upstream 25432 36121722 ~ 36123863 (+) True G162829
TU220553 lncRNA upstream 28893 36119381 ~ 36120402 (+) False pygo1
TU220449 lncRNA upstream 320470 35828020 ~ 35828825 (+) False G162746
TU220583 lncRNA downstream 10095 36179840 ~ 36181301 (+) True G162848
TU220585 lncRNA downstream 13015 36182760 ~ 36183548 (+) True G162850
XR_454969.3 lncRNA downstream 13974 36183719 ~ 36185659 (+) True LOC103046468
TU220576 lncRNA downstream 14030 36183775 ~ 36185631 (+) False LOC103046468
TU220579 lncRNA downstream 14030 36183775 ~ 36185631 (+) False LOC103046468
XM_007251867.3 mRNA upstream 1193 36142088 ~ 36148102 (+) True LOC103046170
XM_022679905.1 mRNA upstream 12555 36127139 ~ 36136740 (+) False dnaaf4
XM_022679903.1 mRNA upstream 12555 36127140 ~ 36136740 (+) True dnaaf4
XM_007251864.3 mRNA upstream 29345 36112042 ~ 36119950 (+) True pygo1
XM_022679902.1 mRNA upstream 38888 36073806 ~ 36110407 (+) True prtg
XM_007251869.3 mRNA downstream 19023 36188768 ~ 36223035 (+) True rab27a
XM_022679413.1 mRNA downstream 221430 36391175 ~ 36439808 (+) True LOC111194719
XM_022679911.1 mRNA downstream 800965 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 800966 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 800966 36970711 ~ 37261985 (+) False LOC103026877
TU219593 other upstream 3430020 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 3854266 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4001105 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 5270983 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 584440 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 1240247 37409992 ~ 37411969 (+) True G163105

Expression Profile