RNA id: TU220579



Basic Information


Item Value
RNA id TU220579
length 629
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC103046468
representative False

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 36183719 ~ 36185659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCTCTGTGTTGCCGTACATGACCTTGCTGTCCTGGTATGGCAGCGCTGTGGGTAGGAGCAGCAGCGCTGATTTTAATACgtttttctctgtatttatagtaataaataatattctGTAGTCCTGCTGGTGGTGTAGTCAGTCAGTAGCCTGTCTCCGCTGTGTGTGAGAGTCAGACCCGCGCGCTCTGATCCTCCTGAGACTGTTTAATCTCCCGGAACTCGCAGACTTTGGTGGAAACTAGCAATAATTTTCAAATGGACTGAAAAGCTTTCTGTAGACTTGCCATCATGCTTCCAAGGCGGATACCATTCAACCAGATCGCTTTTGCAACTCTGCTCGGGGTAGGAGGGGGCATCTATATCTACAAACCCATGTTTGAACTTCCACGAAGGTCCAGAAGCACACCAAGCCAACAGGACATCAAAACTGAAGCAGACAGTAAAGGGACTGATCCAGGCGTACATGAAAATACTGCCAAACCAGCAGCAAGTGCAACAAATACTGGAGCAACACCAGAGGCTTCTGCAGCCAAATGAAGCTTGACAGTGATCCTCAAATCAATATGTTCATGCATCTGTGTGCCTTTGCAGTTTGTCTGtgtttaactaaataaaaagccATGTACATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU220585 lncRNA upstream 227 36182760 ~ 36183548 (+) True G162850
TU220583 lncRNA upstream 2474 36179840 ~ 36181301 (+) True G162848
TU220565 lncRNA upstream 14048 36132415 ~ 36169727 (+) False ccpg1
TU220552 lncRNA upstream 59912 36121722 ~ 36123863 (+) True G162829
TU220553 lncRNA upstream 63373 36119381 ~ 36120402 (+) False pygo1
TU220619 lncRNA downstream 43094 36228725 ~ 36229855 (+) True G162870
TU220636 lncRNA downstream 48121 36233752 ~ 36234088 (+) True G162883
TU220657 lncRNA downstream 87493 36273124 ~ 36273362 (+) True G162893
TU220668 lncRNA downstream 202390 36388021 ~ 36388392 (+) True G162904
TU220681 lncRNA downstream 302137 36487768 ~ 36487983 (+) True G162917
XM_022679908.1 mRNA upstream 14030 36149295 ~ 36169745 (+) True ccpg1
XM_022679906.1 mRNA upstream 14030 36149295 ~ 36169745 (+) False ccpg1
XM_022679907.1 mRNA upstream 14030 36149296 ~ 36169745 (+) False ccpg1
XM_007251867.3 mRNA upstream 35673 36142088 ~ 36148102 (+) True LOC103046170
XM_022679903.1 mRNA upstream 47035 36127140 ~ 36136740 (+) True dnaaf4
XM_007251869.3 mRNA downstream 3137 36188768 ~ 36223035 (+) True rab27a
XM_022679413.1 mRNA downstream 205544 36391175 ~ 36439808 (+) True LOC111194719
XM_022679911.1 mRNA downstream 785079 36970710 ~ 37261985 (+) False LOC103026877
XM_022679909.1 mRNA downstream 785080 36970711 ~ 37261985 (+) True LOC103026877
XM_022679912.1 mRNA downstream 785080 36970711 ~ 37261985 (+) False LOC103026877
TU219593 other upstream 3464500 32714183 ~ 32719275 (+) True G162096
TU219521 other upstream 3888746 32236316 ~ 32295029 (+) True G162032
TU219503 other upstream 4035585 32068862 ~ 32148190 (+) True G162017
TU219178 other upstream 5305463 30875118 ~ 30878312 (+) False hmgn2
TU220729 other downstream 568554 36754185 ~ 36754687 (+) True G162964
TU220936 other downstream 1224361 37409992 ~ 37411969 (+) True G163105

Expression Profile


TU220579 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

TU220579 Expression in each Bioproject

Bar chart with 7 bars.
TU220579 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.